logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003282_00683

You are here: Home > Sequence: MGYG000003282_00683

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Coprobacter sp900545915
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Coprobacteraceae; Coprobacter; Coprobacter sp900545915
CAZyme ID MGYG000003282_00683
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
482 MGYG000003282_8|CGC1 54416.74 8.8702
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003282 3080391 MAG United States North America
Gene Location Start: 35098;  End: 36546  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003282_00683.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 216 472 1.9e-45 0.7876923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.18e-17 240 399 233 397
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.70e-09 254 462 94 305
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 3.21e-05 255 366 148 258
Probable polygalacturonase At3g15720
PLN02793 PLN02793 2.44e-04 226 398 143 328
Probable polygalacturonase
PLN03010 PLN03010 3.02e-04 254 395 166 305
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QIU92674.1 2.24e-175 9 482 6 483
SCM55434.1 1.89e-157 11 473 8 467
SDS06655.1 1.47e-141 17 482 26 510
AWW32777.1 8.27e-141 9 479 13 497
APA66227.1 6.24e-140 17 482 13 497

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.68e-11 252 465 197 415
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A1DBR6 5.68e-06 223 464 207 458
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
A7PZL3 5.83e-06 255 379 209 338
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.037171 0.828695 0.133157 0.000348 0.000292 0.000303

TMHMM  Annotations      download full data without filtering help

start end
7 24