CAZyme Information: MGYG000003282_00998

Basic Information

• Species: Coprobacter sp900545915
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Coprobacteraceae; Coprobacter; Coprobacter sp900545915
• CAZyme ID: MGYG000003282_00998
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
654		74912.31	9.0052

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003282	3080391	MAG	United States	North America

• Gene Location: Start: 9536; End: 11500 Strand: -

Full Sequence      

MILKKISFLLFIFLIGYLSLYADNFPQKSIDGKGFYLYKVNRAEGFYSICKKFDVSKEEI
IQFNPSAKYGLKSGQELLIPIKGVKTVIPEAEPSYFVHTVSAGETLYAISRMYHISTDSI
VALNPGSEKGIRIGTKLKIPQINSNTSSDFSMPNNTRNQYIFHTIAPKETLFSVSRKYGI
SVESVLKQNPGLSPSNFAIGKVIRIIPEQNNERVQKNNTPKTFLYTVKKKETLYSIAQQF
DITIDDIRACNPGIGEIKKNDTINIPVKESPTDISQASTHEDINQIYNDLYSIEKDGKVN
VAVLLPFMLSQKEDARSALYLEYYQGFLLAVDSLKKQGTSINVYAYDTEGKSSTLDNILS
KPEMKSMDLIIGPADNNLIQKTAEFALRNNINMVNAFSLKNDEANHNTHVLQTNIPHSYL
YAEAATELVRQFGNKQVIFLLDDNNADEKKDFINSVKAELRHKNIQFKDFHIASDPELTM
LNSSLPENSDILVISNSSTKNSVGKIIAPLTKLKDDRTDLSITLFGYPEWQTYTKEYLNN
FHKLNTVIFTRFYTNPTDYDWKEFQKNFYFWYNKDMINANPKYGLLGFDTGMYFLNALKQ
YGKNFENHLNQIESSSIQTDFKFQRINNWSGFINKSFYFVYFKPSYIIEKRVIR

Enzyme Prediction     

No EC number prediction in MGYG000003282_00998.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK06347	PRK06347	1.82e-12	37	251	332	576	1,4-beta-N-acetylmuramoylhydrolase.
cd00118	LysM	5.61e-09	97	139	2	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
cd00118	LysM	3.94e-08	225	265	3	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476	LysM	8.35e-08	98	140	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd00118	LysM	1.26e-07	161	205	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCI62460.1	4.23e-240	11	654	10	654
BBD45766.1	4.66e-137	29	650	35	658
QUT48586.1	4.30e-133	96	654	40	600
SCM58365.1	1.07e-131	31	650	39	657
QUT53910.1	1.43e-131	96	654	40	602

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31852	5.52e-09	39	251	30	253	D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1
P44493	1.20e-06	98	205	294	429	Probable N-acetylmuramoyl-L-alanine amidase AmiB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=amiB PE=3 SV=1
P0C1U7	2.04e-06	98	251	29	186	N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus OX=1280 GN=sle1 PE=3 SV=1
Q2FJH7	2.04e-06	98	251	29	186	N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus (strain USA300) OX=367830 GN=sle1 PE=3 SV=1
Q2G0U9	2.04e-06	98	251	29	186	N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=sle1 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000354	0.999013	0.000181	0.000138	0.000132	0.000138

TMHMM  Annotations     

start	end
7	26