logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003282_02290

You are here: Home > Sequence: MGYG000003282_02290

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Coprobacter sp900545915
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Coprobacteraceae; Coprobacter; Coprobacter sp900545915
CAZyme ID MGYG000003282_02290
CAZy Family PL12
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
666 76797.22 6.8122
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003282 3080391 MAG United States North America
Gene Location Start: 7439;  End: 9439  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003282_02290.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL12 420 541 9.5e-19 0.9420289855072463

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07940 Hepar_II_III 2.55e-18 412 556 5 159
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.
pfam16889 Hepar_II_III_N 6.02e-08 283 352 243 317
Heparinase II/III N-terminus. This is the N-terminal domain of heparinase II/III proteins. It is a toroid-like domain.
pfam05426 Alginate_lyase 3.01e-07 153 328 68 250
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.
cd00244 AlgLyase 0.002 223 327 148 259
Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SCD20870.1 1.15e-155 42 659 20 633
QDO68586.1 2.20e-140 40 659 17 633
QUT88595.1 7.66e-138 40 659 17 633
ALJ60398.1 7.66e-138 40 659 17 633
QDO69002.1 6.38e-125 45 659 598 1213

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4NEI_A 5.70e-24 139 559 88 549
Alg17cPL17 Family Alginate Lyase [Saccharophagus degradans 2-40],4NEI_B Alg17c PL17 Family Alginate Lyase [Saccharophagus degradans 2-40]
4OK4_A 5.70e-24 139 559 88 549
CrystalStructure of Alg17c Mutant H202L [Saccharophagus degradans 2-40],4OK4_B Crystal Structure of Alg17c Mutant H202L [Saccharophagus degradans 2-40]
4OJZ_A 1.00e-23 139 559 88 549
CrystalStructure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OJZ_B Crystal Structure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OK2_A Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40],4OK2_B Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B2FSW8 4.85e-26 139 559 95 554
Alginate lyase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt2602 PE=1 SV=1
Q21FJ0 3.12e-23 139 559 88 549
Exo-oligoalginate lyase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=alg17C PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000444 0.998882 0.000202 0.000160 0.000152 0.000147

TMHMM  Annotations      download full data without filtering help

start end
5 22