CAZyme Information: MGYG000003287_00112

Basic Information

• Species: Prevotella melaninogenica
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella melaninogenica
• CAZyme ID: MGYG000003287_00112
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
455	MGYG000003287_7|CGC1	51964.28	9.5819

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003287	3259243	MAG	United States	North America

• Gene Location: Start: 2691; End: 4058 Strand: -

Full Sequence      

MLFLAMTFSYSVLAQSVQWRDQHKVKRKETIFGIAKEYGVTIPQLLDANPAMKQAGYELK
KGDLIFVPYSKEGDFLPDGSVKGKTDKKAATKSTVAQAPVKAVNSIRVGVMLPLHNQDGD
GKRMVEYYRGILLALNQLKSEGITTEVHAWNVPKGADIRNTLLEPNASKLDVIFGPLYSE
QVKPLADFCRAYDIKLVIPFSITGNDVETNPNIFQVYQTEASLTNKAIASFLERFQKSHH
PIFINCKDETSQVGEFTTSLRKQLDLQKIKYNLTSLKSSNADFSKHFDATRPNVVILNSE
KSPQLNEVFNKLDQLKKARPGIAISLYGYNQWFVYQDYYLDQYFKYNTYIPSTYYYNKAA
DKTKELEAKYTEQYGEPMSRQYIPRMAITGYDQAQFFVRGLKANGKNFKGTAAEVKYRPL
QTRYDFVRVGQGGYINDNFQLVHFKTDQTMENLVY

Enzyme Prediction     

No EC number prediction in MGYG000003287_00112.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd00118	LysM	1.37e-06	23	67	3	39	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
cd06268	PBP1_ABC_transporter_LIVBP-like	3.35e-05	107	399	1	288	periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
smart00257	LysM	3.69e-05	23	60	2	43	Lysin motif.
pfam01476	LysM	9.87e-05	23	49	1	27	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd06339	PBP1_YraM_LppC_lipoprotein-like	1.73e-04	107	215	1	103	periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUB62527.1	0.0	1	455	9	463
QUB56650.1	0.0	1	455	9	463
QUB57976.1	0.0	1	455	9	463
ASE17931.1	0.0	1	455	9	463
QUB68831.1	0.0	1	455	9	463

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.029634	0.969007	0.000437	0.000348	0.000292	0.000277

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003287_00112.