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CAZyme Information: MGYG000003319_00349

You are here: Home > Sequence: MGYG000003319_00349

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminiclostridium_E;
CAZyme ID MGYG000003319_00349
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
376 43506.67 4.3726
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003319 1809679 MAG United Republic of Tanzania Africa
Gene Location Start: 2258;  End: 3388  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003319_00349.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH5 58 343 7.6e-44 0.980327868852459

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd21510 agarase_cat 0.010 119 281 5 187
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16471.1 6.28e-108 33 376 20 363
CCO03823.1 1.11e-101 11 376 11 398
AGS51602.1 2.87e-101 40 342 40 357
ADD61974.1 2.94e-101 43 376 68 407
ADU21807.1 4.27e-98 43 376 72 409

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000176 0.109154 0.890451 0.000077 0.000088 0.000062

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003319_00349.