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CAZyme Information: MGYG000003358_03499

You are here: Home > Sequence: MGYG000003358_03499

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Kluyvera ascorbata
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera; Kluyvera ascorbata
CAZyme ID MGYG000003358_03499
CAZy Family PL9
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
725 MGYG000003358_144|CGC1 78158.36 5.4553
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003358 4968008 MAG United States North America
Gene Location Start: 1654;  End: 3831  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.9

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 379 723 1.5e-107 0.9733333333333334

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 2.23e-07 475 613 29 142
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam14592 Chondroitinas_B 0.002 403 557 6 143
Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate.
cd14251 PL-6 0.006 404 514 7 130
Polysaccharide Lyase Family 6. Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BBV68460.1 0.0 1 725 1 725
BBS98982.1 0.0 1 725 1 725
BBR61266.1 0.0 1 725 1 725
QIR25293.1 0.0 1 725 1 725
BBQ86283.1 0.0 1 725 1 725

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 9.16e-29 385 715 18 360
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 2.02e-09 477 721 167 410
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 1.02e-281 28 681 34 688
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A6 1.63e-28 385 715 43 385
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 7.24e-28 385 715 43 385
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000289 0.998921 0.000217 0.000216 0.000187 0.000160

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003358_03499.