Species | Citrobacter werkmanii | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter werkmanii | |||||||||||
CAZyme ID | MGYG000003372_02900 | |||||||||||
CAZy Family | GT83 | |||||||||||
CAZyme Description | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase | |||||||||||
CAZyme Property |
|
|||||||||||
Genome Property |
|
|||||||||||
Gene Location | Start: 74677; End: 76332 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GT83 | 4 | 523 | 8.2e-156 | 0.9648148148148148 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK13279 | arnT | 0.0 | 1 | 550 | 2 | 552 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase. |
COG1807 | ArnT | 6.83e-111 | 11 | 524 | 14 | 535 | 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Cell wall/membrane/envelope biogenesis]. |
pfam02366 | PMT | 2.63e-48 | 3 | 237 | 1 | 245 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families. |
pfam13231 | PMT_2 | 3.61e-10 | 61 | 222 | 2 | 157 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QET67258.1 | 0.0 | 1 | 551 | 1 | 551 |
AYL66886.1 | 0.0 | 1 | 551 | 1 | 551 |
AWS95967.1 | 0.0 | 1 | 551 | 1 | 551 |
BBV35046.1 | 0.0 | 1 | 551 | 1 | 551 |
BBV30032.1 | 0.0 | 1 | 551 | 1 | 551 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
5EZM_A | 9.63e-37 | 10 | 387 | 37 | 412 | CrystalStructure of ArnT from Cupriavidus metallidurans in the apo state [Cupriavidus metallidurans CH34],5F15_A Crystal Structure of ArnT from Cupriavidus metallidurans bound to Undecaprenyl phosphate [Cupriavidus metallidurans CH34] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
B4TBG8 | 0.0 | 1 | 551 | 2 | 548 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=arnT PE=3 SV=1 |
Q8Z538 | 4.07e-315 | 1 | 551 | 1 | 547 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella typhi OX=90370 GN=arnT PE=3 SV=2 |
Q5PNA8 | 4.07e-315 | 1 | 551 | 1 | 547 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) OX=295319 GN=arnT PE=3 SV=2 |
B5BCP4 | 4.22e-315 | 1 | 551 | 2 | 548 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=arnT PE=3 SV=1 |
C0Q067 | 8.51e-315 | 1 | 551 | 2 | 548 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella paratyphi C (strain RKS4594) OX=476213 GN=arnT PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.999129 | 0.000879 | 0.000028 | 0.000001 | 0.000001 | 0.000013 |
start | end |
---|---|
7 | 29 |
81 | 103 |
112 | 134 |
175 | 197 |
204 | 226 |
257 | 279 |
292 | 309 |
314 | 333 |
346 | 368 |
383 | 401 |
408 | 427 |
Copyright 2022 © YIN LAB, UNL. All rights reserved. Designed by Jinfang Zheng and Boyang Hu. Maintained by Yanbin Yin.