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CAZyme Information: MGYG000003377_04064

You are here: Home > Sequence: MGYG000003377_04064

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytobacter sp002377245
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter; Phytobacter sp002377245
CAZyme ID MGYG000003377_04064
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
442 46677.54 7.8398
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003377 5122475 MAG United States North America
Gene Location Start: 183995;  End: 185323  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003377_04064.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 50 409 2.1e-77 0.9292307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.02e-58 12 393 66 466
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02218 PLN02218 2.79e-34 22 404 64 409
polygalacturonase ADPG
pfam00295 Glyco_hydro_28 1.83e-31 64 378 12 272
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 1.63e-26 31 408 58 399
Probable polygalacturonase
PLN02188 PLN02188 6.78e-26 30 414 41 395
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AMO47306.1 1.44e-269 1 442 1 442
QDY44470.1 1.83e-230 6 442 1 437
QEW33161.1 7.94e-229 26 442 375 791
CAX58716.1 4.54e-228 26 442 375 791
QBR50864.1 2.59e-227 26 442 375 791

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BHE_A 1.63e-41 23 345 12 320
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
3JUR_A 2.06e-36 31 404 33 411
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 7.50e-23 31 403 50 425
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 5.09e-19 22 401 148 564
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
2IQ7_A 1.74e-15 168 388 96 317
Crystalstructure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P18192 2.94e-41 22 345 37 346
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 1.52e-40 23 345 38 346
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
A7PZL3 5.42e-35 31 403 68 424
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q8RY29 5.26e-29 23 343 65 359
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
P43212 7.47e-26 29 348 62 355
Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000214 0.999105 0.000192 0.000165 0.000149 0.000136

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003377_04064.