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CAZyme Information: MGYG000003377_04080
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytobacter sp002377245 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter; Phytobacter sp002377245 | |||||||||||
| CAZyme ID | MGYG000003377_04080 | |||||||||||
| CAZy Family | PL22 | |||||||||||
| CAZyme Description | Oligogalacturonate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 199900; End: 201027 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL22 | 214 | 375 | 7.1e-60 | 0.630188679245283 |
| PL22 | 32 | 138 | 1.2e-28 | 0.39245283018867927 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam14583 | Pectate_lyase22 | 0.0 | 2 | 375 | 3 | 382 | Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers. |
| COG0823 | TolB | 2.03e-28 | 33 | 374 | 92 | 400 | Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]. |
| PRK01029 | tolB | 8.51e-06 | 217 | 372 | 167 | 309 | Tol-Pal system protein TolB. |
| PRK01742 | tolB | 2.40e-04 | 4 | 82 | 217 | 295 | Tol-Pal system protein TolB. |
| PRK00178 | tolB | 0.003 | 42 | 118 | 250 | 329 | Tol-Pal system protein TolB. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QDK17813.1 | 1.37e-272 | 1 | 375 | 1 | 375 |
| QVV61369.1 | 1.95e-272 | 1 | 375 | 1 | 375 |
| QGU12135.1 | 5.60e-272 | 1 | 375 | 1 | 375 |
| QCZ26408.1 | 2.28e-271 | 1 | 375 | 1 | 375 |
| QGW18454.1 | 3.24e-271 | 1 | 375 | 1 | 375 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3PE7_A | 6.09e-200 | 2 | 375 | 3 | 382 | Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081] |
| 3C5M_A | 1.30e-177 | 2 | 375 | 3 | 382 | Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P21258 | 7.06e-201 | 2 | 375 | 3 | 382 | Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2 |
| Q59418 | 4.07e-200 | 2 | 375 | 3 | 382 | Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000057 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |