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CAZyme Information: MGYG000003378_00168

You are here: Home > Sequence: MGYG000003378_00168

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Chimaeribacter arupi
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Chimaeribacter; Chimaeribacter arupi
CAZyme ID MGYG000003378_00168
CAZy Family GH108
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
181 MGYG000003378_6|CGC1 20816.73 7.039
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003378 4918955 MAG United States North America
Gene Location Start: 2786;  End: 3331  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003378_00168.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH108 7 90 2.2e-24 0.9767441860465116

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3926 ZliS 2.20e-42 4 179 6 173
Lysozyme family protein [General function prediction only].
cd13926 N-acetylmuramidase_GH108 8.20e-29 7 90 7 91
N-acetylmuramidase domain of the glycosyl hydrolase 108 family. This domain acts as a lysozyme (N-acetylmuramidase), EC:3.2.1.17. It contains a conserved EGGY motif near the N-terminus, the glutamic acid within this motif is essential for catalytic activity. In bacteria, it may activate the secretion of large proteins via the breaking and rearrangement of the peptidoglycan layer during secretion. It is frequently found at the N-terminus of proteins containing a peptidoglycan binding domain.
pfam05838 Glyco_hydro_108 9.57e-29 7 90 1 86
Glycosyl hydrolase 108. This family acts as a lysozyme (N-acetylmuramidase), EC:3.2.1.17. It contains a conserved EGGY motif near the N-terminus, the glutamic acid within this motif is essential for catalytic activity. In bacteria, it may activate the secretion of large proteins via the breaking and rearrangement of the peptidoglycan layer during secretion. It is frequently found at the N-terminus of proteins containing a C-terminal pfam09374 domain.
pfam09374 PG_binding_3 1.06e-24 94 178 2 76
Predicted Peptidoglycan domain. This family contains a potential peptidoglycan binding domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCR37230.1 4.72e-108 1 181 1 181
AEX53500.1 9.24e-85 1 180 1 180
BCG09942.1 8.38e-84 1 180 1 180
QBJ08951.1 4.37e-83 1 180 1 180
AZP43632.1 4.37e-83 1 180 1 180

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6V3Z_A 6.24e-72 6 180 25 199
ChainA, Sen1395 [Salmonella enterica subsp. enterica serovar Enteritidis],6V3Z_B Chain B, Sen1395 [Salmonella enterica subsp. enterica serovar Enteritidis]
6V40_A 1.18e-71 6 180 23 197
ChainA, PG_binding_3 domain-containing protein [Salmonella enterica subsp. enterica serovar Typhi],6V40_B Chain B, PG_binding_3 domain-containing protein [Salmonella enterica subsp. enterica serovar Typhi],6V40_C Chain C, PG_binding_3 domain-containing protein [Salmonella enterica subsp. enterica serovar Typhi],6V40_D Chain D, PG_binding_3 domain-containing protein [Salmonella enterica subsp. enterica serovar Typhi]
7DNP_A 1.78e-07 10 136 13 129
ChainA, Secretion activator protein, hypothetical [Brucella abortus bv. 1 str. 9-941]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000082 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003378_00168.