CAZyme Information: MGYG000003383_00300

Basic Information

• Species: Bifidobacterium scardovii
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium scardovii
• CAZyme ID: MGYG000003383_00300
• CAZy Family: GH23
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
333		35838.71	5.6487

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003383	3123324	MAG	United States	North America

• Gene Location: Start: 47586; End: 48587 Strand: -

Full Sequence      

MANHSKRVPTLRSLSKRQWMKITAVVAATGMLAGAGIVSRNFYAASQHAAQSQVTSYSAT
DADALQVSRGEARESMRGADKNTTYVTVKINGESRTVLGSDFTDVKSVLDAGNITLEPDD
SVSPQLTDPVSESTVITIQRAGTQVETNEEPIAFNTVKKETDSLPQGQEKVENEGEEGVM
ETTSLVTRSGDKIVSSNVFTSYVKKAPVDKVILVGTGSTTPTAAAANIGTTVPAGDMQSW
AHDYLLANGYSEADFTATVYIINHESGWRVNATNASSGAYGLAQALPGSKMASVGADWAT
NYQTQLKWFWNYCASRYGSIQGAYSFWTTHHWY

Enzyme Prediction     

No EC number prediction in MGYG000003383_00300.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3583	YabE	1.02e-20	86	216	154	283	Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains [Function unknown].
pfam07501	G5	1.56e-19	143	216	1	74	G5 domain. This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins involved in metabolism of bacterial cell walls suggesting this domain may have an adhesive function.
pfam03990	DUF348	1.06e-05	86	126	1	40	Domain of unknown function (DUF348). This domain normally occurs as tandem repeats; however it is found as a single copy in the S. cerevisiae DNA-binding nuclear protein YCR593. This protein is involved in sporulation part of the SET3C complex, which is required to repress early/middle sporulation genes during meiosis. The bacterial proteins are likely to be involved in a cell wall function as they are found in conjunction with the pfam07501 domain, which is involved in various cell surface processes.
pfam18013	Phage_lysozyme2	1.35e-05	241	311	6	84	Phage tail lysozyme. This domain has a lysozyme like fold. It is found in the tail protein of various phages probably giving them the ability to degrade the host cell wall peptidoglycan layer.
cd13925	RPF	3.67e-04	260	289	5	34	core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BAQ32170.1	1.29e-233	1	333	1	333
QOL35822.1	1.96e-162	1	331	1	335
AGH40682.1	6.80e-160	1	333	1	334
QAY32375.1	7.04e-160	1	333	1	335
QOL32701.1	2.16e-159	1	333	1	337

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as TAT

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.002072	0.001527	0.000259	0.837514	0.158579	0.000035

TMHMM  Annotations     

start	end
22	44