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CAZyme Information: MGYG000003387_02897
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_R sp900766265 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_R; Pseudomonas_R sp900766265 | |||||||||||
| CAZyme ID | MGYG000003387_02897 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | Oxygen-dependent choline dehydrogenase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 640144; End: 641853 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 2 | 532 | 1.2e-166 | 0.9929577464788732 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG2303 | BetA | 0.0 | 1 | 537 | 6 | 539 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| PRK02106 | PRK02106 | 0.0 | 1 | 559 | 4 | 559 | choline dehydrogenase; Validated |
| TIGR01810 | betA | 0.0 | 4 | 537 | 1 | 532 | choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli, Staphylococcus xylosus, and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. [Cellular processes, Adaptations to atypical conditions] |
| pfam00732 | GMC_oxred_N | 2.78e-68 | 73 | 301 | 15 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| pfam05199 | GMC_oxred_C | 5.19e-41 | 393 | 527 | 3 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ANI26486.1 | 8.16e-190 | 2 | 537 | 70 | 607 |
| CAB3230510.1 | 1.14e-188 | 2 | 537 | 24 | 561 |
| AWP09430.1 | 1.93e-188 | 2 | 537 | 19 | 556 |
| CAG5086058.1 | 5.48e-162 | 1 | 553 | 13 | 585 |
| CAG5089487.1 | 1.93e-158 | 3 | 537 | 17 | 564 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6ZH7_A | 1.78e-82 | 2 | 543 | 7 | 572 | ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 6YRU_AAA | 1.78e-82 | 2 | 543 | 7 | 572 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 6YS1_AAA | 2.50e-82 | 2 | 543 | 7 | 572 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
| 5NCC_A | 2.62e-82 | 2 | 543 | 23 | 588 | Structureof Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis] |
| 6YS2_AAA | 3.50e-82 | 2 | 543 | 7 | 572 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q1CFR7 | 0.0 | 1 | 553 | 1 | 553 | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=betA PE=3 SV=1 |
| Q4K4K7 | 0.0 | 2 | 553 | 4 | 555 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=betA PE=3 SV=1 |
| Q48CM7 | 0.0 | 2 | 553 | 6 | 557 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=betA PE=3 SV=1 |
| Q3K5H3 | 0.0 | 2 | 556 | 4 | 558 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=betA PE=3 SV=1 |
| Q4ZM63 | 0.0 | 2 | 553 | 6 | 557 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000053 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |