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CAZyme Information: MGYG000003400_00403
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Stenotrophomonas sp003028475 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas sp003028475 | |||||||||||
| CAZyme ID | MGYG000003400_00403 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 7727; End: 8986 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 37 | 397 | 5.5e-133 | 0.9943502824858758 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 0.0 | 34 | 412 | 1 | 375 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 2.69e-177 | 34 | 412 | 1 | 379 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 5.96e-132 | 37 | 408 | 1 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 1.29e-121 | 37 | 411 | 8 | 385 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 2.93e-50 | 39 | 372 | 231 | 566 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QPX93099.1 | 1.80e-288 | 1 | 419 | 1 | 419 |
| ALA85937.1 | 5.15e-288 | 1 | 419 | 1 | 419 |
| ALA89893.1 | 5.15e-288 | 1 | 419 | 1 | 419 |
| QGM00507.1 | 1.04e-287 | 1 | 419 | 1 | 419 |
| QGM04674.1 | 1.04e-287 | 1 | 419 | 1 | 419 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 2.48e-116 | 32 | 411 | 4 | 380 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 2.48e-116 | 32 | 411 | 4 | 380 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q4USP7 | 1.32e-210 | 33 | 416 | 42 | 425 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=lpxB PE=3 SV=2 |
| Q8PAW6 | 1.32e-210 | 33 | 416 | 42 | 425 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=lpxB PE=3 SV=2 |
| Q8PML8 | 2.75e-210 | 32 | 412 | 42 | 422 | Lipid-A-disaccharide synthase OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=lpxB PE=3 SV=2 |
| Q3BVL7 | 3.91e-210 | 33 | 412 | 43 | 422 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) OX=316273 GN=lpxB PE=3 SV=1 |
| Q5H1F3 | 1.35e-206 | 33 | 412 | 43 | 422 | Lipid-A-disaccharide synthase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000052 | 0.000009 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |