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CAZyme Information: MGYG000003400_01960

You are here: Home > Sequence: MGYG000003400_01960

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Stenotrophomonas sp003028475
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas sp003028475
CAZyme ID MGYG000003400_01960
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1055 MGYG000003400_30|CGC1 117120.32 6.1368
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003400 4365701 MAG United States North America
Gene Location Start: 8634;  End: 11801  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003400_01960.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM32 204 302 7.1e-17 0.7983870967741935

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 1.78e-12 208 304 18 124
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 4.50e-05 208 291 29 126
Substituted updates: Jan 31, 2002
smart00231 FA58C 6.41e-05 208 304 28 133
Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
COG3408 GDB1 4.54e-04 516 714 178 374
Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism].
COG3459 COG3459 0.002 517 710 496 700
Cellobiose phosphorylase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNG81035.1 0.0 1 1055 1 1055
QDL28755.1 0.0 1 1055 1 1055
QPX91680.1 0.0 1 1055 1 1055
QNG90261.1 0.0 1 1055 1 1055
QNG85343.1 0.0 1 1055 1 1055

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000400 0.998733 0.000212 0.000217 0.000201 0.000189

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003400_01960.