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CAZyme Information: MGYG000003405_00086
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Leuconostoc citreum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc; Leuconostoc citreum | |||||||||||
| CAZyme ID | MGYG000003405_00086 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 8870; End: 10030 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK10783 | mltD | 1.58e-15 | 7 | 130 | 319 | 446 | membrane-bound lytic murein transglycosylase D; Provisional |
| cd00118 | LysM | 3.93e-12 | 33 | 73 | 5 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
| smart00257 | LysM | 4.23e-12 | 87 | 130 | 1 | 44 | Lysin motif. |
| cd00118 | LysM | 9.50e-12 | 87 | 130 | 2 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
| pfam01476 | LysM | 3.64e-11 | 88 | 131 | 1 | 43 | LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QOY97926.1 | 2.01e-227 | 1 | 386 | 1 | 386 |
| QEA56158.1 | 8.17e-227 | 1 | 386 | 1 | 386 |
| QQE98359.1 | 6.69e-226 | 1 | 386 | 1 | 386 |
| QEA45229.1 | 6.69e-226 | 1 | 386 | 1 | 386 |
| ACA82064.1 | 6.69e-226 | 1 | 386 | 1 | 386 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| O34669 | 1.41e-10 | 5 | 152 | 1 | 144 | Cell wall-binding protein YocH OS=Bacillus subtilis (strain 168) OX=224308 GN=yocH PE=1 SV=1 |
| P07540 | 9.81e-08 | 33 | 130 | 165 | 257 | Endolysin OS=Bacillus phage PZA OX=10757 GN=15 PE=3 SV=1 |
| P11187 | 9.81e-08 | 33 | 130 | 165 | 257 | Endolysin OS=Bacillus phage phi29 OX=10756 GN=15 PE=1 SV=1 |
| Q2G0D4 | 1.04e-07 | 15 | 116 | 13 | 119 | Probable autolysin SsaALP OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=SAOUHSC_00671 PE=1 SV=1 |
| Q49UX4 | 6.47e-07 | 5 | 133 | 1 | 132 | N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sle1 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000268 | 0.999022 | 0.000177 | 0.000192 | 0.000174 | 0.000153 |