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CAZyme Information: MGYG000003419_00883

You are here: Home > Sequence: MGYG000003419_00883

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RF16 sp900766775
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; RF16; RF16 sp900766775
CAZyme ID MGYG000003419_00883
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
497 MGYG000003419_115|CGC1 54774.74 6.8004
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003419 2335712 MAG Fiji Oceania
Gene Location Start: 25063;  End: 26556  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003419_00883.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 76 485 2.3e-70 0.9538461538461539

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.48e-68 33 393 62 417
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.19e-20 179 450 58 303
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 6.37e-17 6 454 13 412
polygalacturonase ADPG
PLN03003 PLN03003 5.14e-15 49 456 24 363
Probable polygalacturonase At3g15720
PLN02188 PLN02188 1.93e-12 46 475 34 393
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGB29865.1 6.07e-143 1 456 1 447
QNT65212.1 3.19e-136 19 468 16 463
QCD38368.1 8.02e-135 7 462 4 454
QCP72058.1 8.02e-135 7 462 4 454
QCD41972.1 4.03e-133 5 456 4 449

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.36e-69 36 494 15 447
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.58e-43 25 476 21 452
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 1.08e-34 49 493 157 606
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 6.70e-28 89 450 51 361
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
4MXN_A 3.48e-14 46 171 21 136
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 7.72e-40 35 459 49 433
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 3.44e-37 49 493 152 600
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P18192 2.88e-27 89 450 77 387
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 5.34e-27 89 450 77 387
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P58598 1.12e-19 87 433 100 432
Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000) OX=267608 GN=pglA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000808 0.998328 0.000266 0.000189 0.000179 0.000187

TMHMM  Annotations      download full data without filtering help

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