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CAZyme Information: MGYG000003419_01585
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | RF16 sp900766775 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; RF16; RF16 sp900766775 | |||||||||||
| CAZyme ID | MGYG000003419_01585 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 5166; End: 6725 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 83 | 497 | 1.3e-83 | 0.9661538461538461 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 1.79e-91 | 40 | 399 | 64 | 398 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 1.13e-18 | 192 | 479 | 60 | 304 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN02218 | PLN02218 | 1.48e-18 | 43 | 490 | 56 | 431 | polygalacturonase ADPG |
| PLN03003 | PLN03003 | 2.11e-17 | 56 | 511 | 21 | 393 | Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 3.81e-12 | 241 | 425 | 160 | 335 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QUU07691.1 | 2.65e-192 | 18 | 516 | 19 | 519 |
| QUT83114.1 | 3.77e-192 | 36 | 516 | 27 | 509 |
| QNL41200.1 | 5.33e-192 | 36 | 516 | 37 | 519 |
| QIU94590.1 | 1.03e-191 | 36 | 516 | 36 | 518 |
| ASM65773.1 | 1.52e-191 | 18 | 516 | 19 | 519 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JUR_A | 1.60e-70 | 52 | 497 | 21 | 429 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 5OLP_A | 4.43e-66 | 42 | 494 | 28 | 441 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 2UVE_A | 2.26e-33 | 28 | 415 | 123 | 506 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
| 1BHE_A | 5.65e-17 | 74 | 490 | 25 | 373 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 4MXN_A | 3.68e-11 | 54 | 306 | 17 | 214 | Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7PZL3 | 2.24e-36 | 56 | 484 | 60 | 430 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P27644 | 3.32e-33 | 241 | 466 | 25 | 248 | Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1 |
| P15922 | 8.77e-33 | 57 | 516 | 150 | 593 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| P18192 | 6.61e-17 | 74 | 480 | 51 | 389 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| P26509 | 3.80e-16 | 74 | 490 | 51 | 399 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as LIPO
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000000 | 0.000000 | 1.000057 | 0.000000 | 0.000000 | 0.000000 |