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CAZyme Information: MGYG000003427_02729

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Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species HGM12587 sp900766915
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; HGM12587; HGM12587 sp900766915
CAZyme ID MGYG000003427_02729
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
407 MGYG000003427_364|CGC1 45574.14 4.1712
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003427 3377258 MAG Fiji Oceania
Gene Location Start: 19822;  End: 21045  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003427_02729.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 6.63e-11 333 393 2 57
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
COG3409 PGRP 4.75e-07 327 393 39 102
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
TIGR02669 SpoIID_LytB 3.41e-06 280 303 237 260
SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]
pfam13620 CarboxypepD_reg 2.89e-05 15 102 11 81
Carboxypeptidase regulatory-like domain.
COG3409 PGRP 1.42e-04 309 391 103 181
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AWY98201.1 2.73e-185 2 407 16 421
QRT50293.1 7.27e-185 2 406 12 418
QJU21247.1 9.28e-185 3 407 11 416
ASN94441.1 9.28e-185 3 407 11 416
QRP40879.1 9.28e-185 3 407 11 416

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

1.000043 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003427_02729.