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CAZyme Information: MGYG000003454_00879

You are here: Home > Sequence: MGYG000003454_00879

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species WG-1 sp900539665
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; WG-1; WG-1 sp900539665
CAZyme ID MGYG000003454_00879
CAZy Family CBM50
CAZyme Description Translation initiation factor IF-2
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
839 92648.27 7.3642
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003454 2551473 MAG Fiji Oceania
Gene Location Start: 17944;  End: 20463  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003454_00879.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
CHL00189 infB 0.0 123 838 47 742
translation initiation factor 2; Provisional
COG0532 InfB 0.0 339 839 2 508
Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis].
PRK05306 infB 0.0 126 837 42 746
translation initiation factor IF-2; Validated
TIGR00487 IF-2 0.0 256 838 1 586
translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors]
cd01887 IF2_eIF5B 3.53e-102 343 507 1 169
Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGL64345.2 1.01e-173 255 834 265 855
CAE6204650.1 1.29e-13 346 549 751 970

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JCJ_f 4.41e-316 237 838 286 889
Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12]
6O7K_f 1.59e-273 333 838 1 508
30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli]
1ZO1_I 6.33e-271 339 837 1 501
IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli]
3J4J_A 4.32e-144 267 834 4 569
Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8]
5LMV_a 4.60e-144 267 834 4 569
Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A6TEI7 1.58e-317 231 839 291 896
Translation initiation factor IF-2 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=infB PE=3 SV=1
B5XSX4 2.26e-317 231 839 291 896
Translation initiation factor IF-2 OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=infB PE=3 SV=1
C4L8X4 1.05e-316 173 838 246 910
Translation initiation factor IF-2 OS=Tolumonas auensis (strain DSM 9187 / TA4) OX=595494 GN=infB PE=3 SV=1
A0KNE3 1.90e-316 229 838 286 897
Translation initiation factor IF-2 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=infB PE=3 SV=1
A9MP36 2.34e-316 237 838 289 892
Translation initiation factor IF-2 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=infB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000065 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003454_00879.