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CAZyme Information: MGYG000003463_00727

You are here: Home > Sequence: MGYG000003463_00727

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Succinivibrio sp900767695
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; Succinivibrio; Succinivibrio sp900767695
CAZyme ID MGYG000003463_00727
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
458 50031.3 8.29
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003463 2187524 MAG Fiji Oceania
Gene Location Start: 44065;  End: 45441  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003463_00727.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 10 369 2.3e-115 0.9887005649717514

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00025 lpxB 3.64e-149 10 386 5 376
lipid-A-disaccharide synthase; Reviewed
COG0763 LpxB 5.86e-130 10 387 5 381
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
pfam02684 LpxB 8.91e-104 10 381 2 374
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
TIGR00215 lpxB 8.66e-99 1 384 1 385
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK01021 lpxB 9.90e-42 1 341 221 560
lipid-A-disaccharide synthase; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCV67379.1 3.64e-101 1 384 1 378
QGS59279.1 5.15e-101 1 384 1 378
QIJ05384.1 7.28e-101 1 384 1 378
QWL03673.1 7.28e-101 1 384 1 378
QTE89605.1 7.28e-101 1 384 1 378

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8N_A 1.27e-83 1 385 1 381
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
5W8S_A 1.27e-83 1 385 1 381
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8EGG2 2.25e-100 1 384 1 378
Lipid-A-disaccharide synthase OS=Shewanella oneidensis (strain MR-1) OX=211586 GN=lpxB PE=3 SV=1
A0KZ10 6.35e-100 1 384 1 378
Lipid-A-disaccharide synthase OS=Shewanella sp. (strain ANA-3) OX=94122 GN=lpxB PE=3 SV=1
Q0HGW8 8.97e-100 1 384 1 378
Lipid-A-disaccharide synthase OS=Shewanella sp. (strain MR-4) OX=60480 GN=lpxB PE=3 SV=1
Q0HT75 1.79e-99 1 384 1 378
Lipid-A-disaccharide synthase OS=Shewanella sp. (strain MR-7) OX=60481 GN=lpxB PE=3 SV=1
B1KNT0 2.45e-99 3 384 4 378
Lipid-A-disaccharide synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000037 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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