dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000003479_00817

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Basic Information help

Species

CAG-312 sp900548275

Lineage

Bacteria; Verrucomicrobiota; Verrucomicrobiae; Opitutales; CAG-312; CAG-312; CAG-312 sp900548275

CAZyme ID

MGYG000003479_00817

CAZy Family

GH39

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
643	MGYG000003479_32\|CGC1	72403.95	9.2213

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003479	2365803	MAG	Fiji	Oceania

Gene Location

Start: 364; End: 2295 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000003479_00817.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH39	73	261	8.3e-24	0.5127610208816705

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3693	XynA	1.39e-07	4	249	8	258	Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
COG1874	GanA	2.09e-05	34	110	18	98	Beta-galactosidase GanA [Carbohydrate transport and metabolism].
pfam02449	Glyco_hydro_42	2.38e-05	42	118	6	82	Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
cd21510	agarase_cat	0.001	119	258	74	239	alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.
pfam11790	Glyco_hydro_cc	0.005	200	250	131	170	Glycosyl hydrolase catalytic core. This family is probably a glycosyl hydrolase, and is conserved in fungi and some Proteobacteria. The pombe member is annotated as being from IPR013781.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM44885.1	2.31e-128	21	611	16	590
QDU57372.1	7.47e-69	32	635	28	624
AVM44901.1	5.76e-60	31	587	24	584
AHF90941.1	7.89e-44	29	602	229	825
QAT16636.1	6.88e-29	32	250	95	325

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	8.01e-10	21	254	91	346	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.512016	0.481735	0.004848	0.000770	0.000284	0.000337

TMHMM Annotations help

There is no transmembrane helices in MGYG000003479_00817.