CAZyme Information: MGYG000003494_00512

Basic Information

• Species: Ruminiclostridium_E sp900768735
• Lineage: Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminiclostridium_E; Ruminiclostridium_E sp900768735
• CAZyme ID: MGYG000003494_00512
• CAZy Family: CBM35
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
608	MGYG000003494_107|CGC1	65336.61	4.7719

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003494	2318157	MAG	Fiji	Oceania

• Gene Location: Start: 9288; End: 11114 Strand: -

Full Sequence      

MKIRKRLISVLLCAALIVSASGCSSNNTSSYPDEGSSSQSGTSDNISADSASDTDSASGS
TTAVADAPQSSQTDSASKQTTVQESEKPAETTDKPAPVTDAPSSTSVQTEKPADTAAKPE
STTAKPANTTAKPASTTAKPADSTPTIQGAVVYEAENASLSNDLSVVSVSGCSGGKAVEQ
FSGRSSYVEFTVTVPSGGLYDIAVFSSGIGGDKENNILVDGEQVGTFKSKGGKLGSYTLT
GVSISKGTHKIKITKSWGWIQLDKIEIYASKGIDDSVYNVTAQLSNKNATAATKSLYKYL
CDSYGNVILSGQVCDGGYSGKEFKAIYGETGKYPAILGLDMMNYTPSRTAFGASSTAVEK
AIEFDKKGGIVTFCWHWNAPTKYLYSTANNTDGWWGGFYTKSSSFDIAKVMNGTDSEGKK
LLDADIKEIAAQLKRLEAAGVPVIWRPLHEASGGWFWWGAKGADAYKKLWVYLYEQLTYT
YKCNNLIWVFNGQSADWYPGDEYVDIIGEDIYPGEKVYTPQSAKFTEALDYSGTNRIVAL
TENGCIFDIDRAVEANTMWAWFCTWSGEFVLNGSSYSEQYTEKSILKKAYASKYVITLDE
LPDLKNYG

Enzyme Prediction     

EC	3.2.1.78	3.2.1.100

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH26	285	600	5.2e-107	0.9966996699669967
CBM35	153	267	5.7e-23	0.9915966386554622

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam02156	Glyco_hydro_26	2.44e-71	286	600	2	311	Glycosyl hydrolase family 26.
cd04086	CBM35_mannanase-like	1.81e-26	151	267	1	118	Carbohydrate Binding Module 35 (CBM35); appended to several carbohydrate binding enzymes, including several glycoside hydrolase (GH) family 26 mannanase domains. This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes, including periplasmic component of ABC-type sugar transport system involved in carbohydrate transport and metabolism, and several glycoside hydrolase (GH) domains, including GH26. These CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. Examples of proteins having CMB35s belonging to this family are mannanase A from Clostridium thermocellum (GH26), Man26B from Paenibacillus sp. BME-14 (GH26), and the multifunctional Cel44C-Man26A from Paenibacillus polymyxa GS01 (which has two GH domains, GH44 and GH26). GH26 mainly includes mannan endo-1,4-beta-mannosidase which hydrolyzes 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans, and galactoglucomannans, but displays little activity towards other plant cell wall polysaccharides. A few proteins belonging to this family have additional CBM3 domains; these CBM3s are not found in the CBM6-CBM35-CBM36_like superfamily.
COG4124	ManB2	1.68e-16	407	544	143	296	Beta-mannanase [Carbohydrate transport and metabolism].
pfam16990	CBM_35	4.69e-14	152	267	1	117	Carbohydrate binding module (family 35). This is a mannan-specific carbohydrate binding domain, previously known as the X4 module. Unlike other carbohydrate binding modules, binding to substrate causes a conformational change.
cd02795	CBM6-CBM35-CBM36_like	1.44e-10	152	267	1	124	Carbohydrate Binding Module 6 (CBM6) and CBM35_like superfamily. Carbohydrate binding module family 6 (CBM6, family 6 CBM), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36). These are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of the appended catalytic modules to their dedicated, insoluble substrates. Many of these CBMs are associated with glycoside hydrolase (GH) domains. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. CBM36s are calcium-dependent xylan binding domains. CBM35s display conserved specificity through extensive sequence similarity, but divergent function through their appended catalytic modules. This alignment model also contains the C-terminal domains of bacterial insecticidal toxins, where they may be involved in determining insect specificity through carbohydrate binding functionality.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
CBL33466.1	4.52e-232	153	604	150	601
ADU21390.1	2.15e-185	153	608	31	490
ADU20884.1	1.35e-167	188	607	61	480
ABX42637.1	3.07e-166	154	607	76	528
ANW98509.1	2.09e-163	171	607	70	506

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3ZM8_A	1.09e-97	149	601	11	447	ChainA, Gh26 Endo-beta-1,4-mannanase [Podospora anserina S mat+]
6HPF_A	4.56e-74	286	601	8	310	Structureof Inactive E165Q mutant of fungal non-CBM carrying GH26 endo-b-mannanase from Yunnania penicillata in complex with alpha-62-61-di-galactosyl-mannotriose [Yunnania penicillata]
6HF2_A	1.36e-53	270	605	33	360	Thestructure of BoMan26B, a GH26 beta-mannanase from Bacteroides ovatus [Bacteroides ovatus ATCC 8483],6HF4_A The structure of BoMan26B, a GH26 beta-mannanase from Bacteroides ovatus, complexed with G1M4 [Bacteroides ovatus ATCC 8483]
3WDQ_A	5.06e-51	278	602	28	353	Crystalstructure of beta-mannanase from a symbiotic protist of the termite Reticulitermes speratus [Symbiotic protist of Reticulitermes speratus],3WDR_A Crystal structure of beta-mannanase from a symbiotic protist of the termite Reticulitermes speratus complexed with gluco-manno-oligosaccharide [Symbiotic protist of Reticulitermes speratus]
6D2X_A	2.82e-38	284	588	4	331	Crystalstructure of the GH26 domain from PbGH26-GH5A endo-beta-mannanase/endo-beta-glucanase from Prevotella bryantii [Prevotella bryantii B14]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
G2Q4H7	6.23e-95	150	601	41	476	Mannan endo-1,4-beta-mannosidase OS=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) OX=573729 GN=Man26A PE=1 SV=1
P49425	7.64e-77	147	607	13	463	Mannan endo-1,4-beta-mannosidase OS=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) OX=518766 GN=manA PE=1 SV=3
P55298	1.86e-66	144	602	14	460	Mannan endo-1,4-beta-mannosidase C OS=Piromyces sp. OX=45796 GN=MANC PE=2 SV=1
P55297	7.31e-66	146	602	17	462	Mannan endo-1,4-beta-mannosidase B OS=Piromyces sp. OX=45796 GN=MANB PE=2 SV=1
P55296	1.09e-64	151	602	22	461	Mannan endo-1,4-beta-mannosidase A OS=Piromyces sp. OX=45796 GN=MANA PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000000	0.000001	1.000062	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003494_00512.