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CAZyme Information: MGYG000003525_00402

You are here: Home > Sequence: MGYG000003525_00402

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RC9 sp004556005
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA932; RC9; RC9 sp004556005
CAZyme ID MGYG000003525_00402
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
644 MGYG000003525_12|CGC3 69046.26 4.9447
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003525 2213098 MAG Fiji Oceania
Gene Location Start: 79690;  End: 81624  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003525_00402.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 217 416 2e-78 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.18e-09 177 362 48 236
Pectate lyase [Carbohydrate transport and metabolism].
cd00063 FN3 2.24e-06 43 127 1 93
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
smart00656 Amb_all 1.06e-05 211 392 3 168
Amb_all domain.
smart00060 FN3 0.009 43 117 1 83
Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBK63670.1 7.34e-177 35 644 9 606
AHW58605.1 2.25e-125 149 638 22 484
CBK68207.1 7.82e-122 166 638 49 544
QUT32882.1 7.82e-122 166 638 49 544
QUR41793.1 7.82e-122 166 638 49 544

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B8NQQ7 2.89e-36 166 627 22 414
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
Q0CLG7 7.34e-36 166 627 22 414
Probable pectate lyase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyC PE=3 SV=1
Q2UB83 1.62e-34 166 627 22 414
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1
A1DPF0 4.17e-34 166 627 23 415
Probable pectate lyase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyC PE=3 SV=1
Q5B297 4.24e-34 155 629 11 413
Probable pectate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000541 0.167497 0.831519 0.000136 0.000186 0.000111

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003525_00402.