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CAZyme Information: MGYG000003536_00040

You are here: Home > Sequence: MGYG000003536_00040

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Verrucomicrobiota; Verrucomicrobiae; Opitutales; CAG-312; CAG-312;
CAZyme ID MGYG000003536_00040
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
451 MGYG000003536_12|CGC1 50073.91 8.3878
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003536 1804941 MAG Fiji Oceania
Gene Location Start: 3271;  End: 4626  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003536_00040.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 85 447 1.1e-55 0.9138461538461539

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.73e-45 59 341 83 379
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.91e-13 112 332 21 215
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 1.55e-07 59 271 37 228
polygalacturonase/glycoside hydrolase family protein
PLN03003 PLN03003 2.24e-07 156 331 114 291
Probable polygalacturonase At3g15720
PLN02218 PLN02218 3.86e-07 56 278 65 272
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT77520.1 4.65e-146 28 445 16 430
QDO69594.1 4.51e-144 28 446 16 431
QQY41746.1 5.53e-143 28 446 16 431
CBK68264.1 5.91e-143 34 446 23 433
QRM98466.1 5.91e-143 34 446 23 433

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 8.88e-25 59 338 45 338
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 4.78e-16 65 366 34 358
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.13e-20 69 314 73 314
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q9FY19 1.21e-10 54 356 55 336
Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1
P18192 1.62e-10 62 382 29 349
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P20041 3.89e-10 56 330 54 355
Polygalacturonase OS=Ralstonia solanacearum OX=305 GN=pglA PE=1 SV=1
P35336 4.22e-08 60 332 91 340
Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.092052 0.677014 0.208629 0.015241 0.006024 0.001021

TMHMM  Annotations      download full data without filtering help

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