CAZyme Information: MGYG000003543.1_00140

Basic Information

• Species: HGM04593 sp900769465
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; HGM04593; HGM04593 sp900769465
• CAZyme ID: MGYG000003543.1_00140
• CAZy Family: GH110
• CAZyme Description: Alpha-1,3-galactosidase B

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
625	MGYG000003543.1_23|CGC1	69967.92	4.7112

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003543.1	3216165	MAG	Fiji	Oceania

• Gene Location: Start: 4249; End: 6126 Strand: +

Full Sequence      

MRKARILFGVALMFSLFSCGNGTKCYYGSDFGIVPGTGEDMTQEFALALETIKAECKGEI
PARLLIDSGEYDFYPDSALVREYYVSNHDQDNPKRVAVALEGMKNFTLENLPTHTGSEYA
NLMMNGRMLPVAMVECENCTLKGIAVDTRVPQITQVEVLENAGGYITYRIAPYVNYRIDN
GRLVVYGSNWEFVPGWGIAFEGDTKHIIYTTSDIGVGTSGVEEVEPYVIRAPWNDARLVP
GSVIAMRSYARPTPGIFVTECKNTSLLNSRVFYAEGMGLLAQMSENITLDGFRVSLRDNE
RYFTTQADATHFSGCKGKITSVNGFYEGMMDDAINVHGTYLRVVERIDDNTLVGRYMHGQ
AYGFYWGGAGDSVQFVQSSTMEVVGGNEVEDIKPYNKEIADGCMSPDFELNFQLDGTKEF
IIRFKKPLPADIANGKYGIENLEWTPEVYFAGNTIRNNRARGALFSTPKSTLVENNLFDH
TSGTAILLCGDCNGWFETGACRDVVIRNNRFVNALTSMFQFTNGIISIYPEIPDLASQTK
YFHGGNGKGVVIENNIFETFDAPIVYAKSLDGLVFRGNKVVQNDDFAPFHWNRYRFLFDK
VTNVTIENNEFSNGFDEQKDVMYRY

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH110	29	609	3.4e-205	0.9908759124087592

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	0.002	434	579	44	157	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229	Beta_helix	0.003	447	613	10	136	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT50242.1	1.84e-255	12	621	10	598
EDN88509.1	3.47e-253	12	621	10	598
CDN32662.1	6.05e-253	16	614	12	591
QRO15322.1	2.92e-242	10	622	9	604
ABR44546.1	2.92e-242	10	622	9	604

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7JW4_A	7.26e-69	29	619	31	605	Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A	3.77e-68	29	619	31	605	Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
A6LFT2	5.84e-243	10	622	9	604	Alpha-1,3-galactosidase B OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=glaB PE=3 SV=1
Q64XV2	2.44e-240	3	606	2	593	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaB PE=3 SV=1
Q5LGZ8	9.85e-240	3	606	2	593	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaB PE=1 SV=1
A6KWM0	2.91e-238	24	606	22	590	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB1 PE=3 SV=1
A6L2M8	2.65e-232	5	614	3	598	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB2 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000000	0.000003	1.000068	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003543.1_00140.