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CAZyme Information: MGYG000003546_00298
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UBA1181 sp900769555 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; UBA1181; UBA1181 sp900769555 | |||||||||||
| CAZyme ID | MGYG000003546_00298 | |||||||||||
| CAZy Family | GH11 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 76208; End: 79930 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH8 | 778 | 1099 | 6.5e-71 | 0.9625 |
| GH11 | 59 | 246 | 7.3e-49 | 0.9774011299435028 |
| GH11 | 317 | 508 | 2.2e-47 | 0.9830508474576272 |
| CBM6 | 551 | 686 | 2.3e-25 | 0.9782608695652174 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00457 | Glyco_hydro_11 | 7.22e-42 | 317 | 489 | 1 | 156 | Glycosyl hydrolases family 11. |
| pfam00457 | Glyco_hydro_11 | 5.83e-40 | 59 | 246 | 2 | 175 | Glycosyl hydrolases family 11. |
| COG3405 | BcsZ | 1.68e-37 | 749 | 1109 | 14 | 353 | Endo-1,4-beta-D-glucanase Y [Carbohydrate transport and metabolism]. |
| cd04080 | CBM6_cellulase-like | 7.11e-37 | 545 | 686 | 1 | 143 | Carbohydrate Binding Module 6 (CBM6); appended to glycoside hydrolase (GH) domains, including GH5 (cellulase). This family includes carbohydrate binding module 6 (CBM6) domains that are appended to several glycoside hydrolase (GH) domains, including GH5 (cellulase) and GH16, as well as to coagulation factor 5/8 carbohydrate-binding domains. CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. The CBM6s are appended to GHs that display a diversity of substrate specificities. For some members of this family information is available about the specific substrates of the appended GH domains. It includes the CBM domains of various enzymes involved in cell wall degradation including, an extracellular beta-1,3-glucanase from Lysobacter enzymogenes encoded by the gluC gene (its catalytic domain belongs to the GH16 family), the tandem CBM domains of Pseudomonas sp. PE2 beta-1,3(4)-glucanase A (its catalytic domain also belongs to GH16), and a family 6 CBM from Cellvibrio mixtus Endoglucanase 5A (CmCBM6) which binds to the beta1,4-beta1,3-mixed linked glucans lichenan, and barley beta-glucan, cello-oligosaccharides, insoluble forms of cellulose, the beta1,3-glucan laminarin, and xylooligosaccharides, and the CBM6 of Fibrobacter succinogenes S85 XynD xylanase, appended to a GH10 domain, and Cellvibrio japonicas Cel5G appended to a GH5 (cellulase) domain. GH5 (cellulase) family includes enzymes with several known activities such as endoglucanase, beta-mannanase, and xylanase, which are involved in the degradation of cellulose and xylans. GH16 family includes enzymes with lichenase, xyloglucan endotransglycosylase (XET), and beta-agarase activities. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. For CmCBM6 it has been shown that these two binding sites have different ligand specificities. |
| pfam01270 | Glyco_hydro_8 | 7.72e-17 | 787 | 1029 | 22 | 254 | Glycosyl hydrolases family 8. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AWI66947.1 | 5.19e-209 | 713 | 1150 | 61 | 491 |
| ADL26516.1 | 3.85e-204 | 710 | 1153 | 26 | 462 |
| ACX74083.1 | 8.33e-204 | 710 | 1153 | 48 | 484 |
| ABW04217.1 | 3.38e-117 | 33 | 254 | 24 | 245 |
| ALJ61523.1 | 1.04e-114 | 735 | 1108 | 40 | 417 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6G00_A | 5.30e-71 | 735 | 1109 | 5 | 396 | CrystalStructure of a GH8 xylanase from Teredinibacter turnerae [Teredinibacter turnerae T7901],6G09_A Crystal Structure of a GH8 xylobiose complex from Teredinibacter turnerae [Teredinibacter turnerae T7901],6G0B_A Crystal Structure of a GH8 xylotriose complex from Teredinibacter Turnerae [Teredinibacter turnerae T7901] |
| 6G0N_A | 2.52e-70 | 735 | 1109 | 5 | 396 | CrystalStructure of a GH8 catalytic mutant xylohexaose complex xylanase from Teredinibacter turnerae [Teredinibacter turnerae T7901] |
| 1WU4_A | 7.44e-67 | 730 | 1117 | 2 | 389 | ChainA, xylanase Y [Halalkalibacterium halodurans C-125],1WU5_A Chain A, xylanase Y [Halalkalibacterium halodurans C-125] |
| 2DRR_A | 1.38e-66 | 730 | 1117 | 2 | 389 | ChainA, Xylanase Y [Halalkalibacterium halodurans C-125] |
| 6SUD_A | 2.36e-66 | 734 | 1108 | 6 | 381 | Structureof L320A mutant of Rex8A from Paenibacillus barcinonensis complexed with xylose. [Paenibacillus barcinonensis],6SUD_B Structure of L320A mutant of Rex8A from Paenibacillus barcinonensis complexed with xylose. [Paenibacillus barcinonensis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A8TGA1 | 6.76e-118 | 33 | 254 | 24 | 245 | Endo-1,4-beta-xylanase S20 OS=Neocallimastix patriciarum OX=4758 GN=xynS20 PE=1 SV=1 |
| P35811 | 1.16e-92 | 12 | 514 | 7 | 516 | Endo-1,4-beta-xylanase C OS=Fibrobacter succinogenes (strain ATCC 19169 / S85) OX=59374 GN=xynC PE=1 SV=2 |
| Q9KB30 | 1.12e-65 | 734 | 1115 | 6 | 387 | Reducing end xylose-releasing exo-oligoxylanase OS=Alkalihalobacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH2105 PE=1 SV=1 |
| A0A0S2UQQ5 | 4.22e-65 | 734 | 1107 | 6 | 380 | Reducing-end xylose-releasing exo-oligoxylanase Rex8A OS=Paenibacillus barcinonensis OX=198119 GN=rex8A PE=1 SV=1 |
| P29127 | 1.73e-51 | 48 | 499 | 35 | 474 | Bifunctional endo-1,4-beta-xylanase A OS=Neocallimastix patriciarum OX=4758 GN=XYNA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.003994 | 0.506563 | 0.488720 | 0.000303 | 0.000194 | 0.000195 |