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CAZyme Information: MGYG000003575_01223

You are here: Home > Sequence: MGYG000003575_01223

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Treponema_D sp900770075
Lineage Bacteria; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema_D; Treponema_D sp900770075
CAZyme ID MGYG000003575_01223
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1344 140803.4 4.5854
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003575 2346376 MAG Fiji Oceania
Gene Location Start: 2011;  End: 6045  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003575_01223.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 1049 1258 2e-64 0.9671361502347418

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00656 Amb_all 4.79e-44 1056 1261 15 189
Amb_all domain.
COG3866 PelB 1.89e-43 1036 1340 80 344
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 2.22e-30 1057 1258 34 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam01095 Pectinesterase 1.14e-11 282 528 12 240
Pectinesterase.
COG4677 PemB 2.75e-11 211 522 8 349
Pectin methylesterase and related acyl-CoA thioesterases [Carbohydrate transport and metabolism, Lipid transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEE17959.1 1.33e-102 925 1344 37 448
QPI00741.1 2.35e-79 925 1344 19 416
QPH98945.1 2.35e-79 925 1344 19 416
QPH93180.1 1.87e-77 925 1344 19 416
QPI07285.1 8.92e-77 925 1344 19 416

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5AMV_A 1.75e-37 1050 1341 120 399
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 2.67e-37 1050 1341 141 420
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 6.58e-37 1050 1341 141 420
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 1.07e-36 1050 1341 120 399
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]
1VBL_A 1.50e-36 1050 1340 125 415
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 1.46e-36 1050 1341 141 420
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
P04960 2.03e-32 1057 1340 110 385
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1
P0C1A5 2.91e-32 1057 1340 128 404
Pectate lyase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelE PE=3 SV=2
P0C1A4 5.30e-32 1057 1258 128 324
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=3 SV=1
P18209 4.58e-31 1057 1222 116 282
Pectate lyase D OS=Dickeya chrysanthemi OX=556 GN=pelD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.011932 0.029316 0.956656 0.000526 0.001396 0.000166

TMHMM  Annotations      download full data without filtering help

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