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CAZyme Information: MGYG000003575_01876

You are here: Home > Sequence: MGYG000003575_01876

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Treponema_D sp900770075
Lineage Bacteria; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema_D; Treponema_D sp900770075
CAZyme ID MGYG000003575_01876
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
436 MGYG000003575_252|CGC1 48277.46 8.3147
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003575 2346376 MAG Fiji Oceania
Gene Location Start: 1370;  End: 2680  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003575_01876.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 166 369 3.3e-66 0.971830985915493

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00656 Amb_all 1.77e-50 175 369 16 186
Amb_all domain.
COG3866 PelB 2.79e-47 33 432 35 344
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 4.14e-36 175 369 34 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEJ18226.1 3.45e-121 24 436 53 475
AEE17959.1 8.92e-85 21 434 42 446
QPH91275.1 1.97e-66 25 436 24 416
QPI07285.1 2.31e-64 6 436 3 416
QPH96000.1 1.77e-63 6 436 3 416

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VBL_A 5.30e-51 33 432 12 415
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
5AMV_A 7.57e-49 32 428 11 396
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 1.20e-48 32 428 32 417
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 3.27e-48 32 428 32 417
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 5.60e-48 32 428 11 396
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 6.59e-48 32 428 32 417
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
P04960 1.32e-41 171 432 106 385
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1
P18209 3.97e-38 171 432 112 391
Pectate lyase D OS=Dickeya chrysanthemi OX=556 GN=pelD PE=3 SV=1
P0C1A4 7.05e-38 171 432 124 404
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=3 SV=1
P0C1A5 7.05e-38 171 432 124 404
Pectate lyase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelE PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001294 0.997280 0.000375 0.000398 0.000340 0.000287

TMHMM  Annotations      download full data without filtering help

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