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CAZyme Information: MGYG000003625_00938

You are here: Home > Sequence: MGYG000003625_00938

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA2913 sp900770895
Lineage Bacteria; Firmicutes_C; Negativicutes; Selenomonadales; Selenomonadaceae; UBA2913; UBA2913 sp900770895
CAZyme ID MGYG000003625_00938
CAZy Family GH28
CAZyme Description Exo-poly-alpha-D-galacturonosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
589 64053.71 9.5383
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003625 2467170 MAG Fiji Oceania
Gene Location Start: 5503;  End: 7272  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.82 3.2.1.67 3.2.1.15

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 172 565 3.7e-64 0.9661538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.42e-70 35 556 2 465
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 3.35e-18 242 559 50 319
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 8.69e-13 117 555 39 418
polygalacturonase ADPG
pfam12708 Pectate_lyase_3 1.65e-07 146 185 2 44
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
PLN03010 PLN03010 2.68e-07 326 489 166 322
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAL81848.1 2.54e-274 7 568 6 565
AJQ29053.1 6.99e-169 31 563 38 576
AIF50363.1 3.08e-163 30 563 38 574
AUG99014.1 6.75e-143 9 563 2 566
AUH03329.1 6.75e-143 9 563 2 566

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2UVE_A 9.11e-133 30 571 37 588
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
3JUR_A 2.77e-21 146 527 28 412
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.66e-18 147 567 46 450
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
4MXN_A 3.19e-07 147 354 23 185
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P15922 2.99e-138 1 563 1 573
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
A7PZL3 7.82e-15 142 529 59 410
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644 2.02e-10 327 469 32 179
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
Q8RY29 2.53e-07 146 501 68 369
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
P35339 4.19e-07 148 552 43 360
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000296 0.998998 0.000170 0.000204 0.000173 0.000150

TMHMM  Annotations      download full data without filtering help

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