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CAZyme Information: MGYG000003642_00994

You are here: Home > Sequence: MGYG000003642_00994

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RUG572 sp900771305
Lineage Bacteria; Verrucomicrobiota; Kiritimatiellae; RFP12; UBA1067; RUG572; RUG572 sp900771305
CAZyme ID MGYG000003642_00994
CAZy Family GH110
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
755 84610.38 7.7087
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003642 3810265 MAG Fiji Oceania
Gene Location Start: 5884;  End: 8151  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003642_00994.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH110 190 724 1.9e-57 0.9945255474452555

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 8.46e-08 556 697 6 136
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229 Beta_helix 1.50e-04 556 694 52 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229 Beta_helix 0.002 554 643 73 152
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
COG5434 Pgu1 0.005 558 704 329 480
Polygalacturonase [Carbohydrate transport and metabolism].
pfam05048 NosD 0.009 557 726 70 189
Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM44429.1 9.82e-214 32 754 50 767
AVM44109.1 6.93e-204 32 754 91 804
AVM44539.1 6.45e-147 32 753 51 761
AVM46987.1 1.01e-108 24 753 12 743
QGQ98096.1 5.88e-93 11 754 851 1585

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7JW4_A 2.79e-21 183 724 22 595
Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A 1.13e-20 183 724 22 595
Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B1V8K7 8.10e-14 184 696 30 585
Alpha-1,3-galactosidase A OS=Streptacidiphilus griseoplanus OX=66896 GN=glaA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.039575 0.142933 0.817117 0.000109 0.000108 0.000159

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003642_00994.