logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003656_00653

You are here: Home > Sequence: MGYG000003656_00653

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA1417 sp003531055
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Acutalibacteraceae; UBA1417; UBA1417 sp003531055
CAZyme ID MGYG000003656_00653
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
425 MGYG000003656_10|CGC2 46304.57 5.0277
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003656 2385409 MAG United States North America
Gene Location Start: 64309;  End: 65586  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003656_00653.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 28 376 1.5e-57 0.92

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 3.82e-49 2 273 83 373
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02188 PLN02188 1.22e-19 1 220 36 232
polygalacturonase/glycoside hydrolase family protein
pfam00295 Glyco_hydro_28 1.44e-18 146 293 88 235
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 5.35e-16 2 220 68 269
polygalacturonase ADPG
PLN02793 PLN02793 2.34e-14 1 273 52 305
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ANU52590.1 1.06e-167 1 417 1 417
QQR30023.1 1.06e-167 1 417 1 417
ASB40742.1 1.06e-167 1 417 1 417
ABP66284.1 5.67e-94 4 391 16 392
ADL42285.1 1.13e-93 4 391 16 392

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 2.21e-24 4 368 47 418
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 6.70e-18 2 310 28 372
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
2UVE_A 1.85e-17 1 250 156 441
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4MXN_A 2.95e-10 4 239 24 236
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
1BHE_A 3.11e-10 11 294 20 301
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 5.43e-19 6 248 67 309
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q949Z1 3.97e-18 1 293 79 364
Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1
P35338 5.89e-15 3 220 42 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1
Q94AJ5 9.21e-15 1 273 52 305
Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1
P26216 3.39e-14 3 220 42 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003656_00653.