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CAZyme Information: MGYG000003680_01517

You are here: Home > Sequence: MGYG000003680_01517

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp000433175
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp000433175
CAZyme ID MGYG000003680_01517
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
457 MGYG000003680_151|CGC1 50391.59 7.7226
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003680 2339843 MAG Italy Europe
Gene Location Start: 31299;  End: 32672  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003680_01517.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 77 430 5.5e-77 0.9261538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.85e-75 19 441 51 501
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 5.03e-19 150 448 54 305
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 4.14e-16 51 425 24 358
Probable polygalacturonase At3g15720
PLN02793 PLN02793 2.22e-15 48 363 50 330
Probable polygalacturonase
PLN02188 PLN02188 3.05e-15 57 365 43 312
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADY35504.1 1.83e-232 1 456 1 453
AND21958.1 3.49e-223 30 456 8 434
AII62903.1 5.46e-223 21 456 23 456
QUT83816.1 5.46e-223 21 456 23 456
QJR67967.1 5.46e-223 21 456 23 456

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 9.21e-90 47 428 41 429
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 1.81e-88 35 450 12 445
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
1BHE_A 2.15e-18 59 363 19 304
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 8.21e-37 33 424 43 424
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644 1.49e-19 207 418 25 254
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
P15922 5.59e-19 14 357 118 477
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P18192 2.47e-18 59 363 45 330
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 1.46e-17 59 363 45 330
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000226 0.999170 0.000144 0.000153 0.000139 0.000137

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003680_01517.