CAZyme Information: MGYG000003681_01770

Basic Information

• Species: Bacteroides stercoris
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides stercoris
• CAZyme ID: MGYG000003681_01770
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1011	MGYG000003681_10|CGC1	112037.54	9.2767

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003681	3833391	Isolate	China	Asia

• Gene Location: Start: 21799; End: 24834 Strand: -

Full Sequence      

MKRLLLFILVIMGCCGRFASDAKRCPATPAVVPPVEPLLVRSAVDDVRCRQWVDSVLGTL
SLKERIGQLFIYTIAPYQDKGNKELLRKVVEDYKVGGLLFSGGLMQNQAILTNEAQRMAD
IPLLITFDGEWGLSMRLRGTPVFPKNMVLGCIQNDTLLYEYGREMARQCRELGVQVNFAP
VADVNINPKNPVINTRSFGENPVNVANKVIAYARGLEDGGVLSVSKHFPGHGDTDVDSHK
SLPVLPFTRERLDSVELYPFRKAVQAGVGGIMVGHLEVPAFEAQRGLPSSLSRNVVYDLL
TRELQFRGLVFTDALAMKGVSKHESLCLKALQAGHDLLLVPRRIKEEVDAILAAVKRGEL
TEQAVEEKCRKVLTYKYALGLNKKPLIRLSGLGTRINTPYTRDLIRRLNLAAVTVLGNAT
KVLPLDPAIKDVAVLNVGEAAEIRPFIKQLSEYTHPVEFQLGKDLPAAGRKALRDKLSGY
KRILVCVTEHRLAAYQSFFAEFAPDVPVVYVCFIPGKQLPQIRQGISAAEAVVLAHSSND
GVQRQVAGILYADAVADGRLSASIGSLFTAGEGITLSPQTKSHFIPEEHGLDSRLLARID
TIAREGIREGAYPGCQVVVLKDGKEMYNKAFGTYTYTTGNKEAVPVTPASVYDVASLTKT
TATLLAVMKLYDKGRLSLTDRVSDYLPYLQDTDKRNITVRKLLFHQSGLPSTLLFYQDAI
DEDSYEGTLFKARPDKLHPARIGRQTWANPNFRFRPGLTSKVRTAECTLQVCDSLWLNKS
FKKEYLQKIADAPLRDKRYRYSCVGFILLQQVVEARAGMPMDEFLAQEFYTPMGLKRTGY
LPLRFLSKEEIVPSSVDPFLRKTVLQGFAHDESAAFQGGVSGNAGLFSTAEEVAQIYQML
LNGGELNGKRYLSKETCRLFTTTVAKGCRRSLGFDKPDMQNPAKSPCALSAPASVYGHTG
FTGTCAWVDPDNGLVYVFLSNRIYPEVWNAKLLKSDIRERIQEAMYRAVLK

Enzyme Prediction     

No EC number prediction in MGYG000003681_01770.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	116	340	3.8e-56	0.9814814814814815

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	8.90e-81	61	374	1	315	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	5.24e-74	60	445	1	368	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	9.99e-55	586	991	30	404	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	1.49e-48	599	987	1	313	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	2.74e-42	559	985	1	366	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRQ48901.1	0.0	1	1011	1	1012
QUT44551.1	0.0	1	1011	1	1012
QUT62072.1	0.0	1	1010	1	1010
QQA30538.1	0.0	1	1010	1	1010
QUT33687.1	0.0	1	1010	1	1009

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	1.38e-64	60	416	11	376	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	8.17e-57	54	427	36	449	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	2.39e-56	54	427	10	423	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	4.13e-56	54	427	40	453	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	5.05e-55	30	372	7	342	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	4.48e-56	54	427	36	449	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	1.74e-43	86	425	55	425	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
Q7WUL3	2.47e-39	52	425	18	398	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1
P77619	1.04e-38	586	987	30	400	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	6.99e-37	586	987	30	400	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000007	0.003787	0.996227	0.000001	0.000002	0.000002

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003681_01770.