You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000003687_00934
You are here: Home > Sequence: MGYG000003687_00934
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Paenibacillus polymyxa | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus polymyxa | |||||||||||
| CAZyme ID | MGYG000003687_00934 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 374703; End: 375410 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam01476 | LysM | 1.81e-06 | 191 | 234 | 6 | 43 | LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. |
| cd00118 | LysM | 2.25e-06 | 190 | 233 | 7 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
| PRK11198 | PRK11198 | 3.13e-06 | 191 | 234 | 103 | 146 | LysM domain/BON superfamily protein; Provisional |
| COG1652 | XkdP | 5.48e-05 | 190 | 234 | 217 | 262 | Nucleoid-associated protein YgaU, contains BON and LysM domains [Function unknown]. |
| smart00257 | LysM | 3.74e-04 | 190 | 233 | 6 | 44 | Lysin motif. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AHC18899.2 | 5.61e-161 | 1 | 235 | 2 | 236 |
| APB77378.1 | 2.20e-160 | 1 | 235 | 1 | 235 |
| AWV35942.1 | 2.12e-67 | 2 | 234 | 3 | 250 |
| AIQ76656.1 | 4.25e-67 | 2 | 234 | 3 | 250 |
| SYX84603.1 | 9.83e-66 | 1 | 234 | 1 | 221 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P45932 | 8.28e-21 | 10 | 235 | 11 | 206 | Uncharacterized protein YqbP OS=Bacillus subtilis (strain 168) OX=224308 GN=yqbP PE=4 SV=1 |
| P54335 | 2.26e-20 | 10 | 235 | 11 | 206 | Phage-like element PBSX protein XkdP OS=Bacillus subtilis (strain 168) OX=224308 GN=xkdP PE=4 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000058 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |