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CAZyme Information: MGYG000003687_05575

You are here: Home > Sequence: MGYG000003687_05575

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus polymyxa
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus polymyxa
CAZyme ID MGYG000003687_05575
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
427 MGYG000003687_46|CGC2 45845.63 7.0769
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003687 5656034 Isolate China Asia
Gene Location Start: 19330;  End: 20613  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 141 354 1.5e-100 0.9906103286384976

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 2.14e-73 6 427 2 344
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 8.73e-59 151 359 12 190
Amb_all domain.
pfam00544 Pec_lyase_C 3.71e-42 137 354 16 210
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AHM67356.1 6.29e-309 1 427 1 427
AUS27970.1 6.29e-309 1 427 1 427
AIY08126.1 6.29e-309 1 427 1 427
QDA28198.1 1.48e-307 1 427 1 427
QPK53941.1 1.48e-307 1 427 1 427

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BN8_A 6.15e-200 11 427 7 419
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 1.76e-199 11 427 7 419
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
5AMV_A 2.73e-198 29 427 1 398
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
2NZM_A 2.23e-197 29 427 1 398
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]
3KRG_A 6.04e-195 29 427 1 398
ChainA, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 3.37e-199 11 427 7 419
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
Q60140 1.31e-89 9 427 16 379
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1
Q51915 5.79e-85 14 427 16 380
Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1
P72242 4.45e-84 21 427 25 379
Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1
Q59671 1.82e-83 24 427 26 380
Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000253 0.999069 0.000171 0.000190 0.000165 0.000148

TMHMM  Annotations      download full data without filtering help

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