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CAZyme Information: MGYG000003733_01167

You are here: Home > Sequence: MGYG000003733_01167

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bradyrhizobium sp003020075
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp003020075
CAZyme ID MGYG000003733_01167
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
392 42813.86 9.8495
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003733 7397431 MAG Canada North America
Gene Location Start: 26510;  End: 27688  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003733_01167.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 12 365 8.8e-112 0.9830508474576272

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00025 lpxB 4.15e-119 10 384 2 372
lipid-A-disaccharide synthase; Reviewed
COG0763 LpxB 6.72e-118 10 387 2 379
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
pfam02684 LpxB 1.28e-80 12 359 1 350
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
TIGR00215 lpxB 3.36e-62 12 350 8 347
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK14089 PRK14089 1.22e-38 10 343 2 312
lipid-A-disaccharide synthase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AUC97286.1 9.56e-252 1 392 1 392
BBB99981.1 9.14e-250 1 392 1 392
QOZ17712.1 9.49e-250 1 392 2 393
QIG92298.1 1.96e-244 1 390 1 390
QOZ34210.1 4.42e-244 1 392 1 392

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8S_A 1.71e-41 12 348 9 345
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]
5W8N_A 2.38e-41 12 348 9 345
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q89KQ7 2.25e-207 1 387 2 387
Lipid-A-disaccharide synthase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=lpxB PE=3 SV=1
Q215D6 1.89e-188 1 387 1 388
Lipid-A-disaccharide synthase OS=Rhodopseudomonas palustris (strain BisB18) OX=316056 GN=lpxB PE=3 SV=1
Q6N5R2 6.19e-184 3 384 5 387
Lipid-A-disaccharide synthase OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) OX=258594 GN=lpxB PE=3 SV=1
Q1QMM4 3.96e-183 7 384 8 386
Lipid-A-disaccharide synthase OS=Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14) OX=323097 GN=lpxB PE=3 SV=1
Q3SRI5 1.01e-178 5 384 6 386
Lipid-A-disaccharide synthase OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000079 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003733_01167.