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CAZyme Information: MGYG000003733_01312
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Bradyrhizobium sp003020075 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp003020075 | |||||||||||
| CAZyme ID | MGYG000003733_01312 | |||||||||||
| CAZy Family | PL5 | |||||||||||
| CAZyme Description | Alginate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 52890; End: 53846 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL5 | 28 | 288 | 1.5e-72 | 0.8990536277602523 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00325 | algL | 2.41e-96 | 30 | 315 | 70 | 359 | polysaccharide lyase. |
| cd00244 | AlgLyase | 1.96e-55 | 71 | 311 | 92 | 339 | Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. |
| pfam05426 | Alginate_lyase | 4.79e-28 | 71 | 254 | 46 | 274 | Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QOZ37146.1 | 4.57e-201 | 1 | 317 | 1 | 317 |
| AOI80506.1 | 4.86e-126 | 23 | 316 | 24 | 318 |
| ABB06219.1 | 1.16e-125 | 15 | 316 | 18 | 318 |
| ALX16800.1 | 1.13e-124 | 25 | 316 | 26 | 318 |
| AKM05103.1 | 1.51e-122 | 26 | 316 | 27 | 318 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4OZW_A | 2.24e-39 | 60 | 311 | 76 | 334 | CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1] |
| 4OZV_A | 4.39e-39 | 60 | 311 | 76 | 334 | CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1] |
| 7FI2_A | 1.78e-35 | 28 | 308 | 2 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHZ_A | 2.99e-35 | 28 | 308 | 2 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHU_A | 3.47e-35 | 28 | 308 | 2 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q02R18 | 4.70e-38 | 60 | 311 | 103 | 361 | Alginate lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=algL PE=3 SV=1 |
| Q06749 | 4.70e-38 | 60 | 311 | 103 | 361 | Alginate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=algL PE=1 SV=2 |
| B7UUU9 | 9.18e-38 | 60 | 311 | 103 | 361 | Alginate lyase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=algL PE=3 SV=1 |
| A6V1P7 | 1.28e-37 | 60 | 311 | 103 | 361 | Alginate lyase OS=Pseudomonas aeruginosa (strain PA7) OX=381754 GN=algL PE=3 SV=1 |
| A5W8V4 | 1.79e-37 | 72 | 311 | 113 | 359 | Alginate lyase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=algL PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000290 | 0.998801 | 0.000417 | 0.000167 | 0.000151 | 0.000144 |