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CAZyme Information: MGYG000003733_01737
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Bradyrhizobium sp003020075 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp003020075 | |||||||||||
| CAZyme ID | MGYG000003733_01737 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 31423; End: 32577 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK11198 | PRK11198 | 3.06e-12 | 335 | 382 | 99 | 146 | LysM domain/BON superfamily protein; Provisional |
| COG1652 | XkdP | 4.01e-09 | 190 | 383 | 42 | 263 | Nucleoid-associated protein YgaU, contains BON and LysM domains [Function unknown]. |
| NF033163 | lipo_LipL71 | 1.00e-08 | 340 | 384 | 416 | 462 | lipoprotein LipL71. Members of this family are lipoprotein LipL71, also known as LruA, as described in Leptospira interrogans but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region. |
| cd00118 | LysM | 1.14e-07 | 335 | 381 | 4 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
| TIGR02899 | spore_safA | 3.40e-06 | 336 | 383 | 1 | 44 | spore coat assembly protein SafA. SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination] |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QOZ14148.1 | 6.73e-199 | 1 | 384 | 4 | 392 |
| BBB94977.1 | 6.73e-199 | 1 | 384 | 4 | 392 |
| QIG96648.1 | 1.54e-191 | 1 | 384 | 4 | 386 |
| SHK85932.1 | 5.12e-136 | 8 | 384 | 1 | 392 |
| SDJ57252.1 | 7.01e-131 | 1 | 384 | 1 | 391 |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.999321 | 0.000684 | 0.000011 | 0.000003 | 0.000002 | 0.000012 |
