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CAZyme Information: MGYG000003733_05589

You are here: Home > Sequence: MGYG000003733_05589

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bradyrhizobium sp003020075
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp003020075
CAZyme ID MGYG000003733_05589
CAZy Family AA3
CAZyme Description Alcohol dehydrogenase [acceptor]
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
535 58066.01 8.031
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003733 7397431 MAG Canada North America
Gene Location Start: 7324;  End: 8931  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003733_05589.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 4 530 1.1e-168 0.9947183098591549

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK02106 PRK02106 0.0 22 529 23 532
choline dehydrogenase; Validated
COG2303 BetA 5.19e-173 22 534 25 539
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
TIGR01810 betA 2.57e-164 22 531 17 529
choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli, Staphylococcus xylosus, and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. [Cellular processes, Adaptations to atypical conditions]
TIGR03970 Rv0697 1.06e-85 22 529 18 487
dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
pfam00732 GMC_oxred_N 3.24e-62 73 297 15 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QWC20507.1 6.44e-154 1 529 1 525
CAB3230510.1 1.07e-139 8 528 28 555
ANI26486.1 9.79e-135 2 529 68 602
AWP09430.1 9.44e-131 2 529 17 551
CAG5086058.1 4.90e-112 5 528 15 563

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6ZH7_A 2.55e-88 1 535 4 567
ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YRU_AAA 3.58e-88 5 535 8 567
ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS1_AAA 5.03e-88 5 535 8 567
ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
5NCC_A 5.34e-88 5 535 24 583
Structureof Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]
6YS2_AAA 7.06e-88 5 535 8 567
ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9WWW2 7.96e-172 5 528 2 527
Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida OX=303 GN=alkJ PE=3 SV=1
Q00593 4.92e-164 5 528 2 527
Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans OX=301 GN=alkJ PE=1 SV=1
Q8NE62 3.05e-144 3 531 39 574
Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
Q6UPE0 7.11e-144 3 529 44 577
Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
Q8BJ64 5.17e-143 3 529 41 574
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000057 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003733_05589.