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CAZyme Information: MGYG000003734_01588

You are here: Home > Sequence: MGYG000003734_01588

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Afipia broomeae
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Afipia; Afipia broomeae
CAZyme ID MGYG000003734_01588
CAZy Family AA3
CAZyme Description putative GMC-type oxidoreductase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
578 62205.75 8.6153
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003734 5238503 MAG Canada North America
Gene Location Start: 42554;  End: 44290  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003734_01588.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 70 376 4.6e-97 0.5651408450704225

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK02106 PRK02106 1.70e-166 70 572 6 531
choline dehydrogenase; Validated
COG2303 BetA 1.86e-138 70 577 8 538
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
pfam00732 GMC_oxred_N 4.02e-48 138 360 16 216
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
pfam05199 GMC_oxred_C 7.62e-40 431 568 1 143
GMC oxidoreductase. This domain found associated with pfam00732.
PLN02785 PLN02785 4.24e-25 52 565 38 569
Protein HOTHEAD

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QWC20507.1 6.78e-116 70 572 6 524
CAB3230510.1 1.24e-106 65 572 20 555
ANI26486.1 8.69e-106 70 572 71 601
AWP09430.1 3.09e-102 70 572 20 550
CAG5086058.1 1.27e-92 70 572 15 563

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3T37_A 2.12e-104 71 564 19 512
Crystalstructure of pyridoxine 4-oxidase from Mesorbium loti [Mesorhizobium loti]
4HA6_A 3.88e-103 71 564 3 496
Crystalstructure of pyridoxine 4-oxidase - pyridoxamine complex [Mesorhizobium loti]
3NNE_A 2.94e-91 70 572 14 526
Crystalstructure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis]
2JBV_A 8.15e-91 70 572 14 526
Crystalstructure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis]
3LJP_A 1.14e-90 70 572 14 526
ChainA, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8NE62 5.54e-114 45 572 17 571
Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
Q6UPE0 3.91e-112 70 572 46 576
Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
Q8BJ64 9.48e-109 53 572 32 573
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
Q988C9 1.22e-104 70 575 7 536
4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
Q47944 5.28e-103 69 572 4 527
L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as TAT

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000083 0.000402 0.000012 0.945085 0.054401 0.000002

TMHMM  Annotations      download full data without filtering help

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