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CAZyme Information: MGYG000003734_04260
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Afipia broomeae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Afipia; Afipia broomeae | |||||||||||
| CAZyme ID | MGYG000003734_04260 | |||||||||||
| CAZy Family | GH103 | |||||||||||
| CAZyme Description | Tn3 family transposase TnXax1 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 12248; End: 13468 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH103 | 36 | 331 | 3.4e-99 | 0.9966101694915255 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| TIGR02283 | MltB_2 | 1.75e-147 | 35 | 332 | 1 | 300 | lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan] |
| pfam13406 | SLT_2 | 2.57e-126 | 35 | 327 | 1 | 291 | Transglycosylase SLT domain. This family is related to the SLT domain pfam01464. |
| COG2951 | MltB | 2.37e-106 | 33 | 336 | 38 | 341 | Membrane-bound lytic murein transglycosylase B [Cell wall/membrane/envelope biogenesis]. |
| PRK10760 | PRK10760 | 1.56e-29 | 107 | 320 | 135 | 343 | murein hydrolase B; Provisional |
| pfam01471 | PG_binding_1 | 2.85e-11 | 349 | 403 | 3 | 57 | Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AVT78419.1 | 2.17e-249 | 6 | 405 | 24 | 425 |
| CAE29837.1 | 4.92e-247 | 19 | 405 | 34 | 420 |
| QQM05963.1 | 4.92e-247 | 19 | 405 | 34 | 420 |
| ACF03370.1 | 9.74e-247 | 20 | 405 | 25 | 410 |
| AVT83259.1 | 8.78e-245 | 21 | 405 | 34 | 418 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5ANZ_A | 4.39e-83 | 33 | 404 | 45 | 418 | CrystalStructure of SltB3 from Pseudomonas aeruginosa. [Pseudomonas aeruginosa],5AO7_A Crystal Structure of SltB3 from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide [Pseudomonas aeruginosa] |
| 5AO8_A | 6.20e-83 | 33 | 404 | 45 | 418 | CrystalStructure of SltB3 from Pseudomonas aeruginosa in complex with NAG-NAM-pentapeptide [Pseudomonas aeruginosa] |
| 5O8X_A | 4.15e-27 | 84 | 333 | 53 | 302 | TheX-ray Structure of Catenated Lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa],5O8X_B The X-ray Structure of Catenated Lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa] |
| 4ANR_A | 5.65e-27 | 84 | 333 | 70 | 319 | Crystalstructure of soluble lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1] |
| 1LTM_A | 8.77e-25 | 107 | 331 | 96 | 315 | AcceleratedX-ray Structure Elucidation Of A 36 Kda Muramidase/transglycosylase Using Warp [Escherichia coli] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P41052 | 8.90e-24 | 107 | 331 | 137 | 356 | Membrane-bound lytic murein transglycosylase B OS=Escherichia coli (strain K12) OX=83333 GN=mltB PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000292 | 0.999008 | 0.000185 | 0.000191 | 0.000158 | 0.000151 |