CAZyme Information: MGYG000003763_01021

Basic Information

• Species: Prevotella brunnea
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella brunnea
• CAZyme ID: MGYG000003763_01021
• CAZy Family: GH73
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
353		40313.37	9.5596

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003763	2033596	MAG	Canada	North America

• Gene Location: Start: 7967; End: 9028 Strand: +

Full Sequence      

MNIRQRYRLFLTVTAAMSFSGDMAAQFFTLRPQIVTRQKMTVKQRVTTQQKDTIKVRPMD
ISFQTGNGMEVSIEKDVPLFVNVKDSLLFGLISQRMNVCLPLDFLKLTSAYGYRKDPVSN
CTVFHNGIDLQCNHAHVYAMLPGIIKKVHYGNKGYGNYIVLEHGIFECLYGHLSMITVHE
GDAVKAGTIVAISGNTGKTTGPHLHIRLRKEGRSVDPNHFVDYLNGYITELQDKMAYLRF
GTKPDRALNIENLMAVLRQYDVKFPQIVVAQALLETGYFTSRVCLENNNLFGLRRPSNGN
YYTFSSWEESVKAYKDYVQYKYKGGNYYDFLNRIGYAEDKEYTSKIGRIVTSL

Enzyme Prediction     

No EC number prediction in MGYG000003763_01021.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH73	258	351	1.9e-16	0.890625

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG0739	NlpD	1.66e-29	100	237	138	277	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain [Cell wall/membrane/envelope biogenesis].
pfam01551	Peptidase_M23	8.96e-29	124	217	2	96	Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.
cd12797	M23_peptidase	6.67e-24	125	206	1	83	M23 family metallopeptidase, also known as beta-lytic metallopeptidase, and similar proteins. This model describes the metallopeptidase M23 family, which includes beta-lytic metallopeptidase and lysostaphin. Members of this family are zinc endopeptidases that lyse bacterial cell wall peptidoglycans; they cleave either the N-acylmuramoyl-Ala bond between the cell wall peptidoglycan and the cross-linking peptide (e.g. beta-lytic endopeptidase) or a bond within the cross-linking peptide (e.g. stapholysin, and lysostaphin). Beta-lytic metallopeptidase, formerly known as beta-lytic protease, has a preference for cleavage of Gly-X bonds and favors hydrophobic or apolar residues on either side. It inhibits growth of sensitive organisms and may potentially serve as an antimicrobial agent. Lysostaphin, produced by Staphylococcus genus, cleaves pentaglycine cross-bridges of cell wall peptidoglycan, acting as autolysins to maintain cell wall metabolism or as toxins and weapons against competing strains. Staphylolysin (also known as LasA) is implicated in a range of processes related to Pseudomonas virulence, including stimulating shedding of the ectodomain of cell surface heparan sulphate proteoglycan syndecan-1, and elastin degradation in connective tissue. Its active site is less constricted and contains a five-coordinate zinc ion with trigonal bipyramidal geometry and two metal-bound water molecules, possibly contributing to its activity against a wider range of substrates than those used by related lytic enzymes, consistent with its multiple roles in Pseudomonas virulence. The family includes members that do not appear to have the conserved zinc-binding site and might be lipoproteins lacking proteolytic activity.
pfam01832	Glucosaminidase	2.09e-13	254	319	5	80	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J that has been shown to hydrolyze peptidoglycan.
PRK11649	PRK11649	9.87e-11	113	217	301	406	putative peptidase; Provisional

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUB71734.1	1.27e-218	1	353	1	353
QUB53548.1	4.81e-197	5	353	2	350
QUI93470.1	4.81e-197	5	353	2	350
QUB51704.1	4.81e-197	5	353	2	350
QUB41748.1	6.17e-194	5	346	2	343

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5J1L_A	3.23e-16	101	240	40	183	Crystalstructure of Csd1-Csd2 dimer I [Helicobacter pylori 26695],5J1L_C Crystal structure of Csd1-Csd2 dimer I [Helicobacter pylori 26695],5J1M_A Crystal structure of Csd1-Csd2 dimer II [Helicobacter pylori 26695],5J1M_C Crystal structure of Csd1-Csd2 dimer II [Helicobacter pylori 26695]
3SLU_A	2.99e-14	101	217	222	338	Crystalstructure of NMB0315 [Neisseria meningitidis ATCC 13091],3SLU_B Crystal structure of NMB0315 [Neisseria meningitidis ATCC 13091]
6MUK_A	3.46e-14	101	217	242	358	1.93Angstrom Resolution Crystal Structure of Peptidase M23 from Neisseria gonorrhoeae. [Neisseria gonorrhoeae FA 1090]
2GU1_A	5.47e-13	101	216	205	324	Crystalstructure of a zinc containing peptidase from vibrio cholerae [Vibrio cholerae]
6JMX_A	1.99e-12	107	225	131	250	ChainA, Peptidase M23 [Campylobacter jejuni],6JMY_A Chain A, Peptidase M23 [Campylobacter jejuni],6KV1_A Chain A, Peptidase M23 [Campylobacter jejuni]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P44693	1.70e-14	114	217	337	442	Uncharacterized metalloprotease HI_0409 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0409 PE=3 SV=1
Q8K9M4	2.20e-10	106	239	271	405	Uncharacterized metalloprotease BUsg_310 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=BUsg_310 PE=3 SV=1
P0AFS9	5.54e-08	114	217	303	407	Murein DD-endopeptidase MepM OS=Escherichia coli (strain K12) OX=83333 GN=mepM PE=1 SV=1
P0AFT1	5.54e-08	114	217	303	407	Murein DD-endopeptidase MepM OS=Shigella flexneri OX=623 GN=mepM PE=3 SV=1
P0AFT0	5.54e-08	114	217	303	407	Murein DD-endopeptidase MepM OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=mepM PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.265391	0.706218	0.021853	0.005291	0.000705	0.000525

TMHMM  Annotations     

start	end
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