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CAZyme Information: MGYG000003769_00656

You are here: Home > Sequence: MGYG000003769_00656

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium;
CAZyme ID MGYG000003769_00656
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1231 MGYG000003769_4|CGC3 130578 4.7908
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003769 4856301 MAG Canada North America
Gene Location Start: 75632;  End: 79327  Strand: -

Full Sequence      Download help

MRTTKERFKK  VVALILATST  VLYSQVNVNA  ASNVTARSTN  EIILTETGGW  LESAYVEWTP60
ISTASGYNVY  YKLANASNAD  FKQLDNDLIR  QYSTYCRADV  LGLEKGNYVI  KVVPIINKVE120
ATTYATTQTI  SVAEQVREGF  AFAKQSPMGT  GSGGYNDNGT  VPSNAQVLYV  TAQTVNTIQL180
DVITNSKGSK  TTGTGLVNIL  TLRQKGYDKT  PLIIRLIGKI  NASDITGLNS  NGYLQVKGCY240
NVTIEGVGED  ATVYGWGMLI  RDSHNVEIRN  LGFMLFPDDG  ISLDTNNENI  WVHNNDILYG300
AAGSDADQVK  GDGSCDVKGF  SNYVTVAYNH  FFDSGKSSLC  GMSDSQEFFV  TYHHNWFDHS360
DSRHPRIRVG  TIHIYNNYFD  GNSKYGVGVT  KGSSAFVEAN  YFRNCKYPML  SSLQGTDIYG420
GSAGTFSSEA  GGMIKAYNNT  IEGATRLVYA  NEDATQFDAY  LATSRNEKVP  NTYKTVSGGT480
TYNNFDTDTS  VIYTYTPDAP  ENVKAEVTTY  AGRVNGGDFK  WTFNNAVDDT  SSDVNKALME540
AIKAYTSDLK  SVGGNSIVVT  PSVTPSVAPT  AEPTVTVAPT  AAPTVTVAPT  VAPTAAPTVT600
VAPTATPTVT  VAPTQSPEIT  ETPSVSQSAG  AKTDLNDIAD  SAFTNIIYVS  PAGTSTATGT660
FDSPMDLETA  IAKAGSIDGV  AIILKEGTYA  FNHQITISAD  NSGNANAYKV  LKASKGAKVT720
LDFSSQAYAT  DTALNDRGIQ  LNASYWYVGG  ITIYGAADNG  MMLSGSHNII  ENCVFDSNRD780
TGLQISRSSS  SVTNYSDWPS  YNTILNCTSK  NNCDPATYEN  ADGFAAKLTC  GDGNVFDGCL840
SYNNNDDGWD  LYAKTETGPI  GVVTIKNSIA  MRNGVTENGT  TNANCDGNGF  KLGGSGGGTP900
HVVINCIAIE  NLHHGFTDNN  NPSAIRVINA  TAFNNNLGGS  KNNFSLYRCS  GAYVANAISY960
TTNNTSDKYV  NLSGEYLVLY  NSSKWYKVSS  LQTMNTGSSA  ARGEVLSTGT  TANDFISVTI1020
PTVGTDFHKV  WRNADGTLNT  NGVAIVSTSS  QFGSFSKDGG  VIGARFSSDN  KTESIAVSIL1080
SGGNSENGGS  GTGGNENGGS  TGGSGTDGSG  NENGGTEVVS  YLHNFTENGL  VSDYFTVVGS1140
LSTSKGTVAY  NDLTLSTCLK  MESSTKVTFT  TSSPSVLKLI  FNTGCNLKIA  IDGTDYTIDN1200
GVLEVELASG  THSITKKDTN  VNLYYISISN  R1231

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Created with Snap611231842463073694304925536156777388008619239841046110711696441051PL9235404PL111221224CBM77
Family Start End Evalue family coverage
PL9 644 1051 3.4e-124 0.984
PL1 235 404 2.9e-45 0.8316831683168316
CBM77 1122 1224 2.9e-34 0.9805825242718447

CDD Domains      download full data without filtering help

Created with Snap61123184246307369430492553615677738800861923984104611071169101512PelB241406Amb_all11201226CBM77211402Pec_lyase_C561632gliding_GltJ
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.46e-77 101 512 1 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 4.96e-32 241 406 17 190
Amb_all domain.
pfam18283 CBM77 6.71e-32 1120 1226 2 108
Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan.
pfam00544 Pec_lyase_C 1.40e-18 211 402 1 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
NF033761 gliding_GltJ 1.78e-06 561 632 423 493
adventurous gliding motility protein GltJ. Adventurous gliding motility protein GltJ, also known as AgmX, occurs in delta-proteobacteria such as Myxococcus xanthus.

CAZyme Hits      help

Created with Snap61123184246307369430492553615677738800861923984104611071169231079AOR96287.1|PL1|PL9_1231079QMW93302.1|PL1|PL9_1231079BBK78741.1|PL1|PL9_191064ADL51369.1|PL1|PL9_151066ABX41986.1|CBM77|PL1|PL9_1
Hit ID E-Value Query Start Query End Hit Start Hit End
AOR96287.1 0.0 23 1079 36 1108
QMW93302.1 0.0 23 1079 36 1108
BBK78741.1 0.0 23 1079 36 1108
ADL51369.1 0.0 9 1064 16 1249
ABX41986.1 4.08e-299 5 1066 3 1165

PDB Hits      download full data without filtering help

Created with Snap611231842463073694304925536156777388008619239841046110711696469371RU4_A112012265FU5_A2414043VMV_A2353873ZSC_A2414021VBL_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 1.77e-36 646 937 16 294
ChainA, Pectate lyase [Dickeya chrysanthemi]
5FU5_A 5.79e-23 1120 1226 7 111
Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens]
3VMV_A 1.47e-21 241 404 80 248
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
3ZSC_A 3.35e-21 235 387 63 221
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
1VBL_A 2.20e-20 241 402 133 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]

Swiss-Prot Hits      download full data without filtering help

Created with Snap611231842463073694304925536156777388008619239841046110711696461051sp|P0C1A6|PLYL_DICCH646937sp|P0C1A7|PLYL_DICD3647935sp|P22751|PLYX_DICCH191411sp|Q65DC2|PTLY_BACLD191411sp|Q8GCB2|PTLY_BACLI
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1A6 1.29e-37 646 1051 41 399
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 1.58e-35 646 937 41 319
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P22751 2.14e-35 647 935 391 639
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
Q65DC2 7.13e-28 191 411 64 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
Q8GCB2 7.13e-28 191 411 64 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000399 0.998828 0.000193 0.000205 0.000174 0.000154

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003769_00656.