CAZyme Information: MGYG000003769_01506

Basic Information

• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
• CAZyme ID: MGYG000003769_01506
• CAZy Family: PL11
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
419	MGYG000003769_12|CGC3	46556.07	4.3147

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003769	4856301	MAG	Canada	North America

• Gene Location: Start: 31585; End: 32844 Strand: -

Full Sequence      

MEAKLIGTIDITAAGNGKGLLGDINGDGRMELIIGQANSDIDDRYVPHQITCVTAYSLDG
TLLWQTGTPNAKPGAFGADFPIQVYDIDGDGKLEILCVMDKKFLILDGNDGSVKKSFELP
GEEAHDCIIIANLRGKERPSDIILKDRYHKMWALDEDFNLLWYHEGNLGHYPWVHDVNGD
GYDEVMAGYDLLDHNGKLLWFCKDLDDHADCLWIGDVNGDGKVEIAVGGSVTCLYDTDGN
ELWRYEGSIESQHIALGQFKKDEPGLMIAGLDRIVRGDGYKGQWDGKDGMFLIDSNGMEV
WKEDRKTKGWLTIVDTLSNWNGEGEDHILAYRRGGGVYPALYDGEGNTKVEFPVDGYVIH
GDLFGRNKEEVIVYTPERAYIFSGTDYDLSDKPSGVPIPQIKRLYSSTLYPGGEYESIS

Enzyme Prediction     

No EC number prediction in MGYG000003769_01506.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd10318	RGL11	5.36e-08	22	200	117	353	Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCJ96195.1	8.86e-231	1	415	1	415
QYR23666.1	2.12e-192	2	414	7	418
QKS48749.1	6.19e-191	20	414	2	395
ANY76765.1	4.50e-189	1	419	1	419
AZK48950.1	2.12e-188	2	414	12	424

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2Z8R_A	1.04e-08	21	197	119	353	Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
4CAG_A	1.38e-08	21	200	126	363	Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2ZUY_A	3.26e-08	21	200	123	360	Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31526	5.82e-08	21	197	156	390	Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527	1.78e-07	21	200	123	360	Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000056	0.000006	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003769_01506.