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CAZyme Information: MGYG000003769_04014
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; | |||||||||||
| CAZyme ID | MGYG000003769_04014 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | Exo-poly-alpha-D-galacturonosidase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3349; End: 4773 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 43 | 448 | 9.8e-81 | 0.9569230769230769 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 5.31e-83 | 6 | 359 | 73 | 400 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 7.95e-19 | 209 | 441 | 98 | 316 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN02218 | PLN02218 | 6.06e-17 | 16 | 441 | 68 | 419 | polygalacturonase ADPG |
| PLN03003 | PLN03003 | 2.91e-11 | 185 | 363 | 125 | 297 | Probable polygalacturonase At3g15720 |
| PLN02793 | PLN02793 | 5.84e-11 | 203 | 434 | 184 | 399 | Probable polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ABX42928.1 | 1.93e-304 | 1 | 474 | 1 | 474 |
| ACR71465.1 | 1.11e-159 | 4 | 435 | 6 | 436 |
| QNM02031.1 | 1.83e-155 | 2 | 433 | 4 | 434 |
| AGA79317.1 | 7.17e-148 | 6 | 465 | 45 | 522 |
| ACX65303.1 | 7.10e-147 | 6 | 450 | 19 | 455 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JUR_A | 1.18e-76 | 6 | 460 | 18 | 440 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 5OLP_A | 2.60e-67 | 6 | 454 | 35 | 452 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 2UVE_A | 2.54e-36 | 16 | 413 | 157 | 543 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
| 6KVH_A | 1.02e-11 | 209 | 368 | 121 | 273 | ChainA, endo-polygalacturonase [Evansstolkia leycettana] |
| 7E56_A | 3.10e-11 | 209 | 368 | 113 | 265 | ChainA, Endo-polygalacturonase [Evansstolkia leycettana] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P15922 | 3.97e-39 | 14 | 452 | 150 | 577 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| A7PZL3 | 8.63e-38 | 14 | 429 | 61 | 424 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P27644 | 8.89e-32 | 200 | 418 | 26 | 249 | Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1 |
| P18192 | 9.01e-18 | 31 | 439 | 48 | 397 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| Q949Z1 | 1.38e-13 | 18 | 363 | 82 | 369 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000048 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |