logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003811_00680

You are here: Home > Sequence: MGYG000003811_00680

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Corynebacterium amycolatum
Lineage Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium amycolatum
CAZyme ID MGYG000003811_00680
CAZy Family CE1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
703 75679.63 4.9255
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003811 2349574 MAG Canada North America
Gene Location Start: 31427;  End: 33538  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003811_00680.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 138 410 1e-53 0.9779735682819384

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0627 FrmB 3.52e-61 134 416 44 316
S-formylglutathione hydrolase FrmB [Defense mechanisms].
COG5479 Psp3 1.61e-37 426 699 88 385
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].
pfam00756 Esterase 5.50e-37 136 408 1 246
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
pfam08310 LGFP 7.47e-21 493 544 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].
COG5479 Psp3 1.12e-14 440 659 218 444
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AIN82131.1 0.0 1 703 1 703
ASE56926.1 0.0 1 703 1 703
QQU97149.1 0.0 1 703 1 703
AYX82608.1 0.0 1 703 1 703
QQB83145.1 0.0 1 703 1 703

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SX4_AAA 7.41e-208 104 688 37 615
ChainAAA, Protein PS1 [Corynebacterium glutamicum],6SX4_BBB Chain BBB, Protein PS1 [Corynebacterium glutamicum],6SX4_CCC Chain CCC, Protein PS1 [Corynebacterium glutamicum],6SX4_DDD Chain DDD, Protein PS1 [Corynebacterium glutamicum]
6SWZ_AAA 1.32e-71 439 688 7 253
ChainAAA, Protein PS1 [Corynebacterium glutamicum]
7MYG_A 1.01e-46 164 397 29 261
ChainA, Diacylglycerol acyltransferase [Mycobacterium tuberculosis],7MYG_B Chain B, Diacylglycerol acyltransferase [Mycobacterium tuberculosis]
1DQZ_A 1.07e-46 164 397 31 263
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis],1DQZ_B Chain B, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]
1DQY_A 1.16e-46 164 397 34 266
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1D7 1.13e-213 104 687 80 657
Protein PS1 OS=Corynebacterium melassecola OX=41643 GN=csp1 PE=4 SV=1
P0C1D6 9.13e-213 104 687 80 657
Protein PS1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=csp1 PE=1 SV=1
O52972 3.79e-45 164 412 79 326
Diacylglycerol acyltransferase/mycolyltransferase Ag85C OS=Mycobacterium avium OX=1764 GN=fbpC PE=3 SV=1
P0A4V5 3.88e-45 164 397 79 311
Diacylglycerol acyltransferase/mycolyltransferase Ag85C OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=fbpC PE=3 SV=1
P9WQN9 3.88e-45 164 397 79 311
Diacylglycerol acyltransferase/mycolyltransferase Ag85C OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=fbpC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000390 0.998840 0.000184 0.000213 0.000171 0.000148

TMHMM  Annotations      download full data without filtering help

start end
21 43