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CAZyme Information: MGYG000003831_01457

You are here: Home > Sequence: MGYG000003831_01457

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; CAG-485;
CAZyme ID MGYG000003831_01457
CAZy Family CBM32
CAZyme Description Elongation factor 4
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
955 104356.68 8.8329
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003831 3246644 MAG United States North America
Gene Location Start: 14455;  End: 17322  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.52

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0532 InfB 0.0 452 955 1 507
Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis].
TIGR00487 IF-2 0.0 374 955 4 586
translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors]
PRK05306 infB 0.0 261 954 54 746
translation initiation factor IF-2; Validated
CHL00189 infB 4.14e-180 261 955 58 742
translation initiation factor 2; Provisional
cd01887 IF2_eIF5B 5.22e-93 457 621 1 169
Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGL64345.2 1.99e-184 382 951 283 855
CAE6204650.1 6.30e-11 460 717 751 1016
CAD7226128.1 6.25e-06 460 588 1372 1498

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JCJ_f 1.81e-199 376 955 310 889
Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12]
6O7K_f 2.69e-192 453 955 7 508
30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli]
1ZO1_I 1.62e-191 453 954 1 501
IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli]
5LMV_a 1.66e-148 446 951 63 569
Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8]
3J4J_A 3.37e-147 446 951 63 569
Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B2RHM9 0.0 1 955 1 979
Translation initiation factor IF-2 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) OX=431947 GN=infB PE=3 SV=1
A6L030 0.0 1 955 1 1003
Translation initiation factor IF-2 OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=infB PE=3 SV=1
A6LHS1 0.0 1 955 1 973
Translation initiation factor IF-2 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=infB PE=3 SV=1
Q7MXE4 0.0 1 955 1 979
Translation initiation factor IF-2 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=infB PE=3 SV=1
Q8A2A1 0.0 1 955 1 1040
Translation initiation factor IF-2 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=infB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000052 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003831_01457.