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CAZyme Information: MGYG000003879_00179
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Duodenibacillus; | |||||||||||
| CAZyme ID | MGYG000003879_00179 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | Translation initiation factor IF-2 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 14288; End: 17194 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG0532 | InfB | 0.0 | 467 | 968 | 2 | 507 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| TIGR00487 | IF-2 | 0.0 | 382 | 968 | 1 | 586 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| PRK05306 | infB | 0.0 | 246 | 967 | 45 | 746 | translation initiation factor IF-2; Validated |
| CHL00189 | infB | 0.0 | 385 | 968 | 158 | 742 | translation initiation factor 2; Provisional |
| cd01887 | IF2_eIF5B | 8.38e-102 | 471 | 634 | 1 | 169 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 2.11e-173 | 382 | 964 | 266 | 855 |
| CAE6204650.1 | 7.20e-14 | 474 | 676 | 751 | 970 |
| AIA01457.1 | 7.91e-07 | 467 | 663 | 7 | 212 |
| AKA01905.1 | 7.64e-06 | 467 | 663 | 7 | 212 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 3.11e-255 | 379 | 968 | 302 | 889 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 1.98e-234 | 467 | 968 | 7 | 508 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 1.19e-233 | 467 | 967 | 1 | 501 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 3J4J_A | 4.48e-155 | 393 | 964 | 4 | 569 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
| 5LMV_a | 9.49e-155 | 393 | 964 | 4 | 569 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q140U6 | 0.0 | 1 | 968 | 1 | 989 | Translation initiation factor IF-2 OS=Paraburkholderia xenovorans (strain LB400) OX=266265 GN=infB PE=3 SV=1 |
| Q39H30 | 0.0 | 1 | 968 | 1 | 972 | Translation initiation factor IF-2 OS=Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383) OX=482957 GN=infB PE=3 SV=1 |
| B4E7L1 | 1.04e-318 | 1 | 968 | 1 | 971 | Translation initiation factor IF-2 OS=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) OX=216591 GN=infB PE=3 SV=1 |
| B2T381 | 2.05e-318 | 1 | 968 | 1 | 986 | Translation initiation factor IF-2 OS=Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) OX=398527 GN=infB PE=3 SV=1 |
| A9ABD5 | 2.09e-318 | 1 | 968 | 1 | 969 | Translation initiation factor IF-2 OS=Burkholderia multivorans (strain ATCC 17616 / 249) OX=395019 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000044 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |