CAZyme Information: MGYG000003883_03723

Basic Information

• Species: Kosakonia cowanii
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kosakonia; Kosakonia cowanii
• CAZyme ID: MGYG000003883_03723
• CAZy Family: PL9
• CAZyme Description: Pectate disaccharide-lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
657	MGYG000003883_331|CGC1	71200.2	6.9312

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003883	4218591	MAG	United States	North America

• Gene Location: Start: 121; End: 2094 Strand: +

Full Sequence      

MLAGKIGVNDVTIAGKKLTPETIADLSKPITLESRGGKIANSHDGLTFFYTTLPVGKNFT
LQATVTVDQFGPENGAKPAAQEGAGLLVRDVIGSARQQPLQEGYEEFPAASNMVMNAIMT
QDKKDNFRVKMQAISREGITQPWGNSGAAIVKTSYREEVDLRKTPAFRLKLERTDSGFIS
SWAPAGSEQWVSQQIPRADLIAVQDKAFYYVGFFASRNAKITVTDASLTTSEAHTVASAP
WQPPALPVVVQIASPAQSGREKYQLQARANYDGSFSVRENEVVIGNEKPIKAGEMYTLPT
RLKQNTTFALTFTPKAEGEAVVQQIKVEKIDPVALTLHVAPQGTAEGSGTVAAPLDIATA
IRLLPPGGKIVLQAGDYPYTEIPLTASGLLKQRKTLEAEGKVVIHGLLLDASYWRIKGIE
VTEKSLRIQGSHNLIEKVVAWRNDDTGIQISSPEKIGRALWASDNRVVDSESWGNEDAGK
INADGFAVKMRVGEGNRLIRCYAHDNIDDGFDLFNKIEDGANGVVVIENSIARNNTSNGF
KLGGEGQPVAHQIRNSKAVGNHLDGFTDNFNPGRLLVENNIAADNQRFNFIFRPSPYGDA
STQGVFRGNKSVRSAPGRYDDAVIGNIDNTNYFIRQGKSVNSEGKELESAAVEAALK

Enzyme Prediction     

EC	4.2.2.9

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL9	333	648	1.6e-96	0.8582887700534759

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	1.17e-05	428	580	29	156	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229	Beta_helix	1.92e-04	418	610	2	157	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam14592	Chondroitinas_B	0.008	351	581	1	201	Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QAR48231.1	0.0	1	657	45	701
APZ04974.1	0.0	1	657	45	701
AZI89593.1	0.0	1	657	45	701
QNQ22585.1	0.0	1	657	45	701
ARD63408.1	0.0	1	649	42	693

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1RU4_A	8.01e-28	338	615	18	319	ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A	1.60e-08	336	596	4	331	Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P22751	5.88e-268	1	635	51	689	Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A7	6.20e-27	338	615	43	344	Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P0C1A6	1.52e-26	338	656	43	391	Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000049	0.000002	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003883_03723.