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CAZyme Information: MGYG000003922_01718

You are here: Home > Sequence: MGYG000003922_01718

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacteroides sp014385165
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp014385165
CAZyme ID MGYG000003922_01718
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
507 MGYG000003922_21|CGC1 56011.12 6.3412
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003922 4876803 MAG China Asia
Gene Location Start: 1341;  End: 2864  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003922_01718.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 50 408 1.3e-56 0.9323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.21e-41 2 431 59 504
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 5.96e-13 22 418 43 395
polygalacturonase
PLN03003 PLN03003 5.90e-11 17 292 17 271
Probable polygalacturonase At3g15720
PLN02188 PLN02188 6.26e-11 15 333 26 345
polygalacturonase/glycoside hydrolase family protein
pfam00295 Glyco_hydro_28 2.31e-10 62 335 11 237
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AMJ66331.1 2.29e-109 23 499 20 500
AMR25945.1 5.29e-106 7 499 3 501
AWM31556.1 1.38e-100 9 497 8 504
QHW33703.1 7.68e-79 26 485 5 466
QJD86476.1 2.48e-75 17 496 2 484

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 8.13e-21 26 251 45 275
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 1.06e-20 27 251 29 265
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
4MXN_A 1.56e-16 26 253 22 225
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
2UVE_A 3.53e-12 16 252 147 408
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 6.98e-07 42 254 26 231
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.83e-17 7 259 44 284
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P35338 5.19e-13 25 251 40 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1
P26216 1.63e-12 25 251 40 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1
P35339 2.90e-12 25 251 40 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1
P15922 2.94e-09 16 252 140 401
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000245 0.998991 0.000193 0.000192 0.000178 0.000161

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003922_01718.